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Source database (GenBank or RefSeq) File type

HZAU_PFXX_2.0

Organism name:

Tachysurus fulvidraco (yellow catfish)

Isolate:

hzauxx_2018

Sex:

female

BioSample:

SAMN10031298

BioProject:

PRJNA489116

Submitter:

Huazhong Agricultural University

Date:

2022/03/21

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_022655615.1 (latest)

RefSeq assembly accession:

GCF_022655615.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAJLOY01

Assembly method:

Flye v. 2.6

Expected final version:

yes

Genome coverage:

50.0x

Sequencing technology:

PacBio RSII; Illumina HiSeq

IDs: 12365001 [UID] 32378468 [GenBank] 32734138 [RefSeq]

See Genome Information for Tachysurus fulvidraco

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_022655615.1	≠	GCF_022655615.1	HZAU_PFXX_2.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	712,016,913
Total ungapped length	711,617,867
Gaps between scaffolds	0
Number of scaffolds	517
Scaffold N50	27,158,553
Scaffold L50	11
Number of contigs	1,317
Contig N50	3,329,536
Contig L50	53
Total number of chromosomes and plasmids	26
Number of component sequences (WGS or clone)	517

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM040247.1	=	NC_062518.1	0
Chromosome 2	CM040248.1	=	NC_062519.1	0
Chromosome 3	CM040249.1	=	NC_062520.1	0
Chromosome 4	CM040250.1	=	NC_062521.1	0
Chromosome 5	CM040251.1	=	NC_062522.1	0
Chromosome 6	CM040252.1	=	NC_062523.1	0
Chromosome 7	CM040253.1	=	NC_062524.1	0
Chromosome 8	CM040254.1	=	NC_062525.1	0
Chromosome 9	CM040255.1	=	NC_062526.1	0
Chromosome 10	CM040256.1	=	NC_062527.1	0
Chromosome 11	CM040257.1	=	NC_062528.1	0
Chromosome 12	CM040258.1	=	NC_062529.1	0
Chromosome 13	CM040259.1	=	NC_062530.1	0
Chromosome 14	CM040260.1	=	NC_062531.1	0
Chromosome 15	CM040261.1	=	NC_062532.1	0
Chromosome 16	CM040262.1	=	NC_062533.1	0
Chromosome 17	CM040263.1	=	NC_062534.1	0
Chromosome 18	CM040264.1	=	NC_062535.1	0
Chromosome 19	CM040265.1	=	NC_062536.1	0
Chromosome 20	CM040266.1	=	NC_062537.1	0
Chromosome 21	CM040267.1	=	NC_062538.1	0
Chromosome 22	CM040268.1	=	NC_062539.1	0
Chromosome 23	CM040269.1	=	NC_062540.1	0
Chromosome 24	CM040270.1	=	NC_062541.1	0
Chromosome 25	CM040271.1	=	NC_062542.1	0
Chromosome 26	CM040272.1	=	NC_062543.1	0
unplaced	n/a	n/a	n/a	491

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	712,016,913	517	711,617,867	27,158,553	800
Chromosome 1	52,494,416	1	52,455,935	52,494,416	77
Chromosome 2	43,560,282	1	43,541,286	43,560,282	38
Chromosome 3	33,069,607	1	33,059,610	33,069,607	20
Chromosome 4	32,868,950	1	32,855,458	32,868,950	27
Chromosome 5	34,347,783	1	34,329,787	34,347,783	36
Chromosome 6	32,203,363	1	32,188,367	32,203,363	30
Chromosome 7	30,632,044	1	30,615,550	30,632,044	33
Chromosome 8	26,342,291	1	26,327,293	26,342,291	30
Chromosome 9	29,452,662	1	29,431,674	29,452,662	42
Chromosome 10	26,151,413	1	26,143,413	26,151,413	16
Chromosome 11	25,632,403	1	25,616,809	25,632,403	32
Chromosome 12	27,792,978	1	27,772,988	27,792,978	40
Chromosome 13	29,375,083	1	29,361,083	29,375,083	28
Chromosome 14	27,158,553	1	27,145,563	27,158,553	26
Chromosome 15	24,152,665	1	24,135,169	24,152,665	35
Chromosome 16	21,831,322	1	21,821,335	21,831,322	20
Chromosome 17	26,231,210	1	26,208,121	26,231,210	47
Chromosome 18	21,113,164	1	21,097,673	21,113,164	31
Chromosome 19	23,052,570	1	23,043,077	23,052,570	19
Chromosome 20	22,140,278	1	22,131,780	22,140,278	17
Chromosome 21	23,057,340	1	23,044,340	23,057,340	26
Chromosome 22	18,646,138	1	18,635,139	18,646,138	22
Chromosome 23	22,146,952	1	22,130,455	22,146,952	33
Chromosome 24	18,738,904	1	18,731,409	18,738,904	15
Chromosome 25	17,829,539	1	17,818,539	17,829,539	22
Chromosome 26	16,972,567	1	16,960,074	16,972,567	25
unplaced	5,022,436	491	5,015,940	33,616	13

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HZAU_PFXX_2.0

See Genome Information for Tachysurus fulvidraco

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

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