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xgHalRufe1.0.p

Organism name:
Haliotis rufescens (red abalone)
Isolate:
VD_foot
BioSample:
SAMN26275698
BioProject:
PRJNA819159
Submitter:
UCLA
Date:
2022/04/19
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_023055435.1 (latest)
RefSeq assembly accession:
GCF_023055435.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 1 unlocalized scaffold on chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JALGQA01
Assembly method:
HiFiasm v. 0.16.1-r375; purge_dups v. 1.2.5; SALSA2 v. 2
Expected final version:
yes
Genome coverage:
43x
Sequencing technology:
PacBio Sequel IIe; Dovetail's OmniC; Illumina NovaSeq
Linked assembly:
GCA_023055495.1 (alternate pseudohaplotype of diploid)

IDs: 12564881 [UID] 32854998 [GenBank] 33411658 [RefSeq]

See Genome Information for Haliotis rufescens

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,334,454,214
Total ungapped length1,334,438,814
Gaps between scaffolds0
Number of scaffolds615
Scaffold N5045,695,856
Scaffold L5011
Number of contigs769
Contig N508,868,657
Contig L5043
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)615

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,334,454,2146151,334,438,81445,695,8561540