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AGI-APGP_CSIRO_Sfru_2.0

Organism name:
Spodoptera frugiperda (fall armyworm)
Isolate:
SF20-4
BioSample:
SAMN26179013
BioProject:
PRJNA809428
Submitter:
Australian Pest Genome Partnership
Date:
2022/08/26
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_023101765.3 (latest)
RefSeq assembly accession:
GCF_023101765.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAKUHG02
Assembly method:
CANU v. 2.2.0; PurgeDups v. 1.2.5; AllHiC v. 1; Racon v. 1.4.3; Masurca-Polca v. 4.0.9
Expected final version:
yes
Genome coverage:
30.0x
Sequencing technology:
Oxford Nanopore PromethION; Illumina NovaSeq

IDs: 13537821 [UID] 35315708 [GenBank] 35474538 [RefSeq]

See Genome Information for Spodoptera frugiperda

Pathogen Detection Resources

There are 10 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length383,923,118
Total ungapped length383,913,858
Gaps between scaffolds0
Number of scaffolds69
Scaffold N5013,003,764
Scaffold L5014
Number of contigs173
Contig N504,914,980
Contig L5029
Total number of chromosomes and plasmids32
Number of component sequences (WGS or clone)69

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_023101775.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM041324.2=NC_064212.10
Chromosome 2CM041325.2=NC_064213.10
Chromosome 3CM041326.2=NC_064214.10
Chromosome 4CM041327.2=NC_064215.10
Chromosome 5CM041328.2=NC_064216.10
Chromosome 6CM041329.2=NC_064217.10
Chromosome 7CM041330.2=NC_064218.10
Chromosome 8CM041331.2=NC_064219.10
Chromosome 9CM041332.2=NC_064220.10
Chromosome 10CM041333.2=NC_064221.10
Chromosome 11CM041334.2=NC_064222.10
Chromosome 12CM041335.2=NC_064223.10
Chromosome 13CM041336.2=NC_064224.10
Chromosome 14CM041337.2=NC_064225.10
Chromosome 15CM041338.2=NC_064226.10
Chromosome 16CM041339.2=NC_064227.10
Chromosome 17CM041340.2=NC_064228.10
Chromosome 18CM041341.2=NC_064229.10
Chromosome 19CM041342.2=NC_064230.10
Chromosome 20CM041343.2=NC_064231.10
Chromosome 21CM041344.2=NC_064232.10
Chromosome 22CM041345.2=NC_064233.10
Chromosome 23CM041346.2=NC_064234.10
Chromosome 24CM041347.2=NC_064235.10
Chromosome 25CM041348.2=NC_064236.10
Chromosome 26CM041349.2=NC_064237.10
Chromosome 27CM041350.2=NC_064238.10
Chromosome 28CM041351.2=NC_064239.10
Chromosome 29CM041352.2=NC_064240.10
Chromosome 30CM041353.2=NC_064241.10
Chromosome 31CM041354.2=NC_064242.10
unplacedn/an/an/a37

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All383,907,75368383,898,49313,003,7641040
Chromosome 114,577,926114,577,62914,577,92630
Chromosome 213,003,764113,003,56513,003,76420
Chromosome 312,691,757112,691,65812,691,75710
Chromosome 412,638,378112,638,07812,638,37830
Chromosome 512,559,537112,559,21412,559,53740
Chromosome 613,237,210113,236,71213,237,21050
Chromosome 712,439,639112,439,26812,439,63940
Chromosome 811,852,158111,851,86011,852,15830
Chromosome 911,521,312111,521,19511,521,31220
Chromosome 1011,349,343111,349,24611,349,34310
Chromosome 1111,211,927111,211,81211,211,92720
Chromosome 1214,568,210114,567,84614,568,21040
Chromosome 1310,342,656110,342,56410,342,65610
Chromosome 1410,386,609110,386,60910,386,60900
Chromosome 1515,381,117115,380,46215,381,11770
Chromosome 168,966,43018,966,2778,966,43020
Chromosome 178,978,08418,978,0848,978,08400
Chromosome 1811,537,133111,536,86211,537,13330
Chromosome 197,993,55417,993,5547,993,55400
Chromosome 2014,350,968114,350,45514,350,96870
Chromosome 217,829,94017,829,6547,829,94030
Chromosome 227,784,35817,784,3587,784,35800
Chromosome 2314,499,729114,499,34314,499,72940
Chromosome 247,068,16717,068,1677,068,16700
Chromosome 2522,093,432122,092,42422,093,432120
Chromosome 2613,945,552113,945,02113,945,55260
Chromosome 2713,982,692113,981,89213,982,69280
Chromosome 2814,028,592114,028,36314,028,59230
Chromosome 2913,719,107113,718,56613,719,10760
Chromosome 3013,599,824113,599,52713,599,82430
Chromosome 3113,622,178113,621,75813,622,17850
unplaced2,146,470372,146,47090,95500
MoleculeTotal
Length
Mitochondrion MT15,365