ASM2315922v1

Organism name:: Perognathus longimembris pacificus (Pacific pocket mouse)
Isolate:: PPM17
Sex:: male
BioSample:: SAMN26876106
BioProject:: PRJNA818714
Submitter:: San Diego Zoo Wildlife Alliance
Date:: 2022/04/27
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_023159225.1 (latest)
RefSeq assembly accession:: GCF_023159225.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JALGBO01
Assembly method:: Peregrine v. JUNE-2020; HiRise v. JULY-2020; Juicer v. DECEMBER-2020; Juicebox Assembly Tools v. DECEMBER-2020
Expected final version:: yes
Genome coverage:: 23.0x
Sequencing technology:: PacBio Sequel

IDs: 12614141 [UID] 33010138 [GenBank] 33225548 [RefSeq]

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_023159225.1	=	GCF_023159225.1	ASM2315922v1	Chromosome	Latest GenBank, Latest RefSeq

Total sequence length	2,212,099,196
Total ungapped length	2,211,301,696
Gaps between scaffolds	0
Number of scaffolds	6,180
Scaffold N50	72,679,016
Scaffold L50	11
Number of contigs	7,987
Contig N50	7,389,774
Contig L50	73
Total number of chromosomes and plasmids	28
Number of component sequences (WGS or clone)	6,180

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM041264.1	=	NC_063161.1	0
Chromosome 2	CM041265.1	=	NC_063162.1	0
Chromosome 3	CM041266.1	=	NC_063163.1	0
Chromosome 4	CM041267.1	=	NC_063164.1	0
Chromosome 5	CM041268.1	=	NC_063165.1	0
Chromosome 6	CM041269.1	=	NC_063166.1	0
Chromosome 7	CM041270.1	=	NC_063167.1	0
Chromosome 8	CM041271.1	=	NC_063168.1	0
Chromosome 9	CM041272.1	=	NC_063169.1	0
Chromosome 10	CM041273.1	=	NC_063170.1	0
Chromosome 11	CM041274.1	=	NC_063171.1	0
Chromosome 12	CM041275.1	=	NC_063172.1	0
Chromosome 13	CM041276.1	=	NC_063173.1	0
Chromosome 14	CM041277.1	=	NC_063174.1	0
Chromosome 15	CM041278.1	=	NC_063175.1	0
Chromosome 16	CM041279.1	=	NC_063176.1	0
Chromosome 17	CM041280.1	=	NC_063177.1	0
Chromosome 18	CM041281.1	=	NC_063178.1	0
Chromosome 19	CM041282.1	=	NC_063179.1	0
Chromosome 20	CM041283.1	=	NC_063180.1	0
Chromosome 21	CM041284.1	=	NC_063181.1	0
Chromosome 22	CM041285.1	=	NC_063182.1	0
Chromosome 23	CM041286.1	=	NC_063183.1	0
Chromosome 24	CM041287.1	=	NC_063184.1	0
Chromosome 25	CM041288.1	=	NC_063185.1	0
Chromosome 26	CM041289.1	=	NC_063186.1	0
Chromosome 27	CM041290.1	=	NC_063187.1	0
Chromosome X	CM041291.1	=	NC_063188.1	0
unplaced	n/a	n/a	n/a	6,152

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,212,099,196	6,180	2,211,301,696	72,679,016	1,807
Chromosome 1	163,161,067	1	163,121,367	163,161,067	89
Chromosome 2	154,903,364	1	154,883,064	154,903,364	55
Chromosome 3	123,368,557	1	123,351,757	123,368,557	44
Chromosome 4	94,457,343	1	94,449,243	94,457,343	25
Chromosome 5	88,062,095	1	88,051,195	88,062,095	37
Chromosome 6	86,909,130	1	86,898,630	86,909,130	33
Chromosome 7	84,693,423	1	84,687,623	84,693,423	18
Chromosome 8	78,092,224	1	78,079,424	78,092,224	36
Chromosome 9	73,479,761	1	73,460,461	73,479,761	41
Chromosome 10	72,679,016	1	72,656,416	72,679,016	50
Chromosome 11	69,408,307	1	69,396,207	69,408,307	33
Chromosome 12	69,053,049	1	69,039,649	69,053,049	34
Chromosome 13	63,825,528	1	63,808,228	63,825,528	41
Chromosome 14	62,483,550	1	62,473,350	62,483,550	26
Chromosome 15	59,853,411	1	59,838,411	59,853,411	38
Chromosome 16	58,939,991	1	58,918,691	58,939,991	45
Chromosome 17	56,883,104	1	56,855,304	56,883,104	66
Chromosome 18	54,053,379	1	53,977,979	54,053,379	154
Chromosome 19	47,349,414	1	47,342,914	47,349,414	17
Chromosome 20	46,535,749	1	46,510,849	46,535,749	57
Chromosome 21	45,661,574	1	45,654,674	45,661,574	17
Chromosome 22	38,122,789	1	38,111,789	38,122,789	26
Chromosome 23	36,809,679	1	36,808,979	36,809,679	3
Chromosome 24	36,415,122	1	36,406,222	36,415,122	21
Chromosome 25	25,456,301	1	25,439,601	25,456,301	39
Chromosome 26	13,372,902	1	13,357,402	13,372,902	39
Chromosome 27	8,832,447	1	8,804,947	8,832,447	55
Chromosome X	109,454,470	1	109,268,170	109,454,470	375
unplaced	289,782,450	6,152	289,649,150	45,479	293