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Source database (GenBank or RefSeq) File type

Oket_V2

Organism name:

Oncorhynchus keta (chum salmon)

Infraspecific name:

Strain: PuntledgeMale-10-30-2019

Sex:

male

BioSample:

SAMN16447169

BioProject:

PRJNA669401

Submitter:

Fisheries and Oceans Canada

Date:

2022/05/16

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_023373465.1 (latest)

RefSeq assembly accession:

GCF_023373465.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAJNGS01

Assembly method:

Flye v. 2.7b-b1526; Racon v. 1.4.16; Pilon v. 1.22; Chromonomer v. 1.10; Ragtag v. 1.01; Custom v. 1.0

Expected final version:

yes

Genome coverage:

29.0x

Sequencing technology:

Oxford Nanopore MinION; Illumina HiSeq

IDs: 12727161 [UID] 33284118 [GenBank] 37758388 [RefSeq]

See Genome Information for Oncorhynchus keta

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_023373465.1	≠	GCF_023373465.1	Oket_V2	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,556,477,726
Total ungapped length	2,556,135,757
Gaps between scaffolds	3,405
Number of scaffolds	17,480
Scaffold N50	2,025,324
Scaffold L50	280
Number of contigs	17,498
Contig N50	2,022,835
Contig L50	280
Total number of chromosomes and plasmids	38
Number of component sequences (WGS or clone)	17,480

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM041650.1	=	NC_068421.1	0
Chromosome 2	CM041651.1	=	NC_068422.1	0
Chromosome 3	CM041652.1	=	NC_068423.1	0
Chromosome 4	CM041653.1	=	NC_068424.1	0
Chromosome 5	CM041654.1	=	NC_068425.1	0
Chromosome 6	CM041655.1	=	NC_068426.1	0
Chromosome 7	CM041656.1	=	NC_068427.1	0
Chromosome 8	CM041657.1	=	NC_068428.1	0
Chromosome 9	CM041658.1	=	NC_068429.1	0
Chromosome 10	CM041659.1	=	NC_068430.1	0
Chromosome 11	CM041660.1	=	NC_068431.1	0
Chromosome 12	CM041661.1	=	NC_068432.1	0
Chromosome 13	CM041662.1	=	NC_068433.1	0
Chromosome 14	CM041663.1	=	NC_068434.1	0
Chromosome 15	CM041664.1	=	NC_068435.1	0
Chromosome 16	CM041665.1	=	NC_068436.1	0
Chromosome 17	CM041666.1	=	NC_068437.1	0
Chromosome 18	CM041667.1	=	NC_068438.1	0
Chromosome 19	CM041668.1	=	NC_068439.1	0
Chromosome 20	CM041669.1	=	NC_068440.1	0
Chromosome 21	CM041670.1	=	NC_068441.1	0
Chromosome 22	CM041671.1	=	NC_068442.1	0
Chromosome 23	CM041672.1	=	NC_068443.1	0
Chromosome 24	CM041673.1	=	NC_068444.1	0
Chromosome 25	CM041674.1	=	NC_068445.1	0
Chromosome 26	CM041675.1	=	NC_068446.1	0
Chromosome 27	CM041676.1	=	NC_068447.1	0
Chromosome 28	CM041677.1	=	NC_068448.1	0
Chromosome 29	CM041678.1	=	NC_068449.1	0
Chromosome 30	CM041679.1	=	NC_068450.1	0
Chromosome 31	CM041680.1	=	NC_068451.1	0
Chromosome 32	CM041681.1	=	NC_068452.1	0
Chromosome 33	CM041682.1	=	NC_068453.1	0
Chromosome 34	CM041683.1	=	NC_068454.1	0
Chromosome 35	CM041684.1	=	NC_068455.1	0
Chromosome 36	CM041685.1	=	NC_068456.1	0
Chromosome 37	CM041686.1	=	NC_068457.1	0
unplaced	n/a	n/a	n/a	14,037

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	2,556,461,070	17,479	2,556,119,101	2,025,324	18	3,405
Chromosome 1	100,781,491	180	100,763,591	3,066,934	0	179
Chromosome 2	81,752,364	66	81,745,864	4,814,252	0	65
Chromosome 3	35,172,482	86	35,163,982	2,140,652	0	85
Chromosome 4	87,941,717	122	87,929,617	3,326,862	0	121
Chromosome 5	39,289,791	151	39,274,791	920,030	0	150
Chromosome 6	44,339,290	68	44,332,590	2,884,820	0	67
Chromosome 7	56,597,874	75	56,590,474	4,220,266	0	74
Chromosome 8	51,230,196	110	51,219,296	1,904,803	0	109
Chromosome 9	46,184,008	91	46,175,008	1,885,846	0	90
Chromosome 10	83,638,433	175	83,620,933	3,395,753	1	174
Chromosome 11	54,879,299	75	54,871,899	3,669,455	0	74
Chromosome 12	57,025,583	74	57,018,283	4,405,042	0	73
Chromosome 13	51,735,353	84	51,727,053	3,805,998	0	83
Chromosome 14	77,100,154	104	77,089,854	5,094,699	0	103
Chromosome 15	46,640,956	80	46,633,056	2,141,804	0	79
Chromosome 16	22,159,535	84	22,151,235	1,604,290	0	83
Chromosome 17	62,744,259	104	62,733,959	2,287,290	0	103
Chromosome 18	58,079,796	115	58,068,396	1,622,116	0	114
Chromosome 19	87,711,413	193	87,692,213	2,770,139	0	192
Chromosome 20	48,384,908	118	48,373,208	3,429,153	0	117
Chromosome 21	59,991,537	102	59,981,427	2,229,912	1	101
Chromosome 22	58,500,653	79	58,492,853	2,684,770	0	78
Chromosome 23	49,035,537	71	49,028,537	1,937,020	0	70
Chromosome 24	49,154,649	86	49,146,149	2,862,699	0	85
Chromosome 25	51,073,702	58	51,068,002	7,556,568	0	57
Chromosome 26	47,266,180	56	47,260,680	3,673,563	0	55
Chromosome 27	49,749,584	59	49,743,784	3,014,705	0	58
Chromosome 28	81,400,567	115	81,389,167	3,092,829	0	114
Chromosome 29	53,654,542	49	53,649,742	3,103,554	0	48
Chromosome 30	62,309,450	109	62,298,650	2,026,341	0	108
Chromosome 31	27,780,665	21	27,778,665	3,214,915	0	20
Chromosome 32	36,593,855	55	36,588,455	2,548,065	0	54
Chromosome 33	26,012,511	30	26,009,611	1,771,870	0	29
Chromosome 34	82,222,654	130	82,209,754	3,978,059	0	129
Chromosome 35	83,059,625	159	83,043,825	4,221,321	0	158
Chromosome 36	29,285,949	26	29,283,449	3,068,377	0	25
Chromosome 37	29,195,980	82	29,187,880	1,871,726	0	81
unplaced	486,784,528	14,037	486,783,169	129,089	16	0

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Oket_V2

See Genome Information for Oncorhynchus keta

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Assembly Unit Name
Primary Assembly
non-nuclear