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bFalChe1.pri

Organism name:
Falco cherrug (Saker falcon)
Isolate:
bFalChe1
Sex:
female
BioSample:
SAMN28688204
BioProject:
PRJNA842831
Submitter:
Vertebrate Genomes Project
Date:
2022/06/02
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_023634085.1 (latest)
RefSeq assembly accession:
GCF_023634085.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAMOAL01
Assembly method:
Hifiasm v. 0.13.0; purge_dups v. 1.2.3; bionano solve v. 3.6.1; salsa2 v. 2.2
Expected final version:
no
Genome coverage:
35.49x
Sequencing technology:
PacBio Sequel II HiFi; Arima Genomics Hi-C; Bionano Genomics DLS
Linked assembly:
GCA_023634115.1 (alternate pseudohaplotype of diploid)

IDs: 12911411 [UID] 33723318 [GenBank] 42310138 [RefSeq]

See Genome Information for Falco cherrug

Pathogen Detection Resources

There are 6 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,309,385,023
Total ungapped length1,305,423,368
Gaps between scaffolds0
Number of scaffolds283
Scaffold N5092,426,045
Scaffold L506
Number of contigs541
Contig N5021,245,687
Contig L5020
Total number of chromosomes and plasmids25
Number of component sequences (WGS or clone)283

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_023634135.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM042449.1=NC_073697.10
Chromosome 2CM042450.1=NC_073698.10
Chromosome 3CM042451.1=NC_073699.10
Chromosome 4CM042452.1=NC_073700.10
Chromosome 5CM042453.1=NC_073701.10
Chromosome 6CM042454.1=NC_073702.10
Chromosome 7CM042455.1=NC_073703.10
Chromosome 8CM042456.1=NC_073704.10
Chromosome 9CM042457.1=NC_073705.10
Chromosome 10CM042458.1=NC_073706.10
Chromosome 11CM042459.1=NC_073707.112
Chromosome 12CM042460.1=NC_073708.10
Chromosome 13CM042461.1=NC_073709.10
Chromosome 14CM042462.1=NC_073710.10
Chromosome 15CM042463.1=NC_073711.10
Chromosome 16CM042464.1=NC_073712.10
Chromosome 17CM042465.1=NC_073713.11
Chromosome 18CM042466.1=NC_073714.10
Chromosome 19CM042467.1=NC_073715.12
Chromosome 20CM042468.1=NC_073716.10
Chromosome 21CM042469.1=NC_073717.13
Chromosome 22CM042470.1=NC_073718.13
Chromosome WCM042471.1=NC_073719.11
Chromosome ZCM042472.1=NC_073720.10
unplacedn/an/an/a236

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,309,366,9642821,305,405,30992,426,0452580
Chromosome 1Assembled molecule127,826,3061127,816,232127,826,30670
Chromosome 2Assembled molecule122,548,9171122,539,869122,548,91750
Chromosome 3Assembled molecule122,441,3741122,423,988122,441,374160
Chromosome 4Assembled molecule113,312,4231113,278,510113,312,423100
Chromosome 5Assembled molecule96,473,976196,451,77496,473,976160
Chromosome 6Assembled molecule92,426,045192,397,11692,426,04550
Chromosome 7Assembled molecule73,999,139173,987,55373,999,13950
Chromosome 8Assembled molecule65,638,367165,395,79165,638,36720
Chromosome 9Assembled molecule57,721,518157,720,81857,721,51820
Chromosome 10Assembled molecule40,334,853140,328,54240,334,85340
Chromosome 11AllAssembled moleculeUnlocalized scaffolds37,744,96734,279,8183,465,1491311237,735,01734,272,9373,462,08034,279,81834,279,818664,7831899000
Chromosome 12Assembled molecule35,963,099135,951,12035,963,09960
Chromosome 13Assembled molecule35,661,234135,657,02335,661,23460
Chromosome 14Assembled molecule24,576,848124,576,60724,576,84820
Chromosome 15Assembled molecule24,361,955124,359,17024,361,95530
Chromosome 16Assembled molecule10,590,485110,589,59110,590,48540
Chromosome 17AllAssembled moleculeUnlocalized scaffolds7,983,0437,779,474203,5692117,979,4867,776,404203,0827,779,4747,779,474203,569321000
Chromosome 18Assembled molecule7,814,76117,777,9607,814,76180
Chromosome 19AllAssembled moleculeUnlocalized scaffolds7,175,3907,104,55070,8403127,074,2007,003,36070,8407,104,5507,104,55043,53122220000
Chromosome 20Assembled molecule6,816,74716,751,5776,816,74770
Chromosome 21AllAssembled moleculeUnlocalized scaffolds2,795,3972,579,231216,1664132,793,8972,578,731215,1662,579,2312,579,231118,838312000
Chromosome 22AllAssembled moleculeUnlocalized scaffolds572,517285,481287,036413571,517284,981286,536181,875285,481181,875211000
Chromosome WAllAssembled moleculeUnlocalized scaffolds31,772,11718,464,96413,307,15321129,057,94417,409,03011,648,91418,464,96418,464,96413,307,153512526000
Chromosome ZAssembled molecule86,073,278185,449,91486,073,278420
unplacedAssembled molecule76,742,20823676,740,093618,74890
MoleculeTotal
Length
Mitochondrion MT18,059