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bFalBia1.pri

Organism name:
Falco biarmicus (lanner falcon)
Isolate:
bFalBia1
Sex:
female
BioSample:
SAMN28688289
BioProject:
PRJNA842826
Submitter:
Vertebrate Genomes Project
Date:
2022/06/02
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_023638135.1 (latest)
RefSeq assembly accession:
GCF_023638135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAMOAT01
Assembly method:
Hifiasm v. 0.13.0; purge_dups v. 1.2.3; bionano solve v. 3.6.1; salsa2 v. 2.2; gEVAL v. 2021-07-07; VGP pipeline v. 2.0
Expected final version:
no
Genome coverage:
28x
Sequencing technology:
PacBio Sequel II HiFi; Arima Genomics Hi-C; Bionano Genomics DLS
Linked assembly:
GCA_023634305.1 (alternate pseudohaplotype of diploid)

IDs: 12913621 [UID] 33729968 [GenBank] 42808718 [RefSeq]

See Genome Information for Falco biarmicus

Pathogen Detection Resources

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,285,492,283
Total ungapped length1,283,339,475
Gaps between scaffolds0
Number of scaffolds397
Scaffold N5091,472,507
Scaffold L506
Number of contigs555
Contig N5024,892,811
Contig L5013
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)397

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_023638895.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM042605.1=NC_079288.10
Chromosome 2CM042606.1=NC_079289.10
Chromosome 3CM042607.1=NC_079290.10
Chromosome 4CM042608.1=NC_079291.10
Chromosome 5CM042609.1=NC_079292.11
Chromosome 6CM042610.1=NC_079293.10
Chromosome 7CM042611.1=NC_079294.10
Chromosome 8CM042612.1=NC_079295.10
Chromosome 9CM042613.1=NC_079296.10
Chromosome 10CM042614.1=NC_079297.10
Chromosome 11CM042615.1=NC_079298.10
Chromosome 12CM042616.1=NC_079299.10
Chromosome 13CM042617.1=NC_079300.17
Chromosome 14CM042618.1=NC_079301.10
Chromosome 15CM042619.1=NC_079302.10
Chromosome 16CM042620.1=NC_079303.10
Chromosome 17CM042621.1=NC_079304.10
Chromosome 18CM042622.1=NC_079305.10
Chromosome 19CM042623.1=NC_079306.11
Chromosome 20CM042624.1=NC_079307.10
Chromosome 21CM042625.1=NC_079308.13
Chromosome 22CM042626.1=NC_079309.15
Chromosome WCM042627.1=NC_079310.10
Chromosome ZCM042628.1=NC_079311.10
unplacedn/an/an/a356

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,285,492,2833971,283,339,47591,472,5071580
Chromosome 1Assembled molecule127,364,7181127,359,316127,364,71870
Chromosome 2Assembled molecule122,593,8821122,581,724122,593,88220
Chromosome 3Assembled molecule121,833,4831121,798,467121,833,48390
Chromosome 4Assembled molecule113,378,6941113,345,205113,378,694120
Chromosome 5AllAssembled moleculeUnlocalized scaffolds92,877,69492,830,26847,42621192,873,12292,825,69647,42692,830,26892,830,26847,426440000
Chromosome 6Assembled molecule91,472,507191,461,45491,472,50710
Chromosome 7Assembled molecule73,596,322173,592,18773,596,32220
Chromosome 8Assembled molecule66,357,009166,355,25566,357,00940
Chromosome 9Assembled molecule56,554,991156,554,59156,554,99120
Chromosome 10Assembled molecule38,144,225138,143,41838,144,22520
Chromosome 11Assembled molecule38,108,784138,098,81738,108,78450
Chromosome 12Assembled molecule34,938,570134,932,48734,938,57050
Chromosome 13AllAssembled moleculeUnlocalized scaffolds30,711,70529,855,761855,94481730,706,11729,851,673854,44429,855,76129,855,761251,425633000
Chromosome 14Assembled molecule24,363,059124,363,05924,363,05900
Chromosome 15Assembled molecule24,046,524124,041,33324,046,52430
Chromosome 16Assembled molecule11,030,820111,030,80711,030,82010
Chromosome 17Assembled molecule6,740,13816,613,3626,740,13890
Chromosome 18Assembled molecule6,513,83816,501,6896,513,83880
Chromosome 19AllAssembled moleculeUnlocalized scaffolds6,384,8226,333,37451,4482116,192,5446,141,09651,4486,333,3746,333,37451,44825250000
Chromosome 20Assembled molecule5,686,81915,686,8195,686,81900
Chromosome 21AllAssembled moleculeUnlocalized scaffolds689,389584,885104,504413689,389584,885104,504584,885584,88553,580000000
Chromosome 22AllAssembled moleculeUnlocalized scaffolds592,408229,976362,432615591,908229,976361,932146,262229,97677,812101000
Chromosome WAssembled molecule25,022,831124,610,98325,022,831140
Chromosome ZAssembled molecule82,548,771181,281,50882,548,771290
unplacedAssembled molecule83,940,28035683,933,914375,48170