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Source database (GenBank or RefSeq) File type

GSC_CCare_1.0

Organism name:

Caretta caretta (Loggerhead turtle)

Isolate:

SJ_126:Eziel1

Sex:

female

BioSample:

SAMN27958248

BioProject:

PRJNA826225

Submitter:

Canada's Genomic Enterprise

Date:

2022/06/07

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_023653815.1 (latest)

RefSeq assembly accession:

GCF_023653815.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAMOIO01

Assembly method:

Racon v. 1.4.13; Medaka v. 1.2.0; Pilon v. 1.23; Salsa v. 2.3; nf-core/hic v. 1.1.0; Juicer v. 1.6; Redbean v. 2.5; LongStitch v. 1.0.1

Expected final version:

yes

Genome coverage:

109.0x

Sequencing technology:

Illumina NovaSeq; Oxford Nanopore PromethION

IDs: 12921611 [UID] 33754118 [GenBank] 34248998 [RefSeq]

See Genome Information for Caretta caretta

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_023653815.1	≠	GCF_023653815.1	GSC_CCare_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,134,012,717
Total ungapped length	2,131,883,923
Gaps between scaffolds	0
Number of scaffolds	2,008
Scaffold N50	130,956,235
Scaffold L50	5
Number of contigs	2,753
Contig N50	18,214,114
Contig L50	35
Total number of chromosomes and plasmids	29
Number of component sequences (WGS or clone)	2,008

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM042760.1	=	NC_064473.1	0
Chromosome 2	CM042761.1	=	NC_064474.1	0
Chromosome 3	CM042762.1	=	NC_064475.1	0
Chromosome 4	CM042763.1	=	NC_064476.1	0
Chromosome 5	CM042764.1	=	NC_064477.1	0
Chromosome 6	CM042765.1	=	NC_064478.1	0
Chromosome 7	CM042766.1	=	NC_064479.1	0
Chromosome 8	CM042767.1	=	NC_064480.1	0
Chromosome 9	CM042768.1	=	NC_064481.1	0
Chromosome 10	CM042769.1	=	NC_064482.1	0
Chromosome 11	CM042770.1	=	NC_064483.1	0
Chromosome 12	CM042771.1	=	NC_064484.1	0
Chromosome 13	CM042772.1	=	NC_064485.1	0
Chromosome 14	CM042773.1	=	NC_064486.1	0
Chromosome 15	CM042774.1	=	NC_064487.1	0
Chromosome 16	CM042775.1	=	NC_064488.1	0
Chromosome 17	CM042776.1	=	NC_064489.1	0
Chromosome 18	CM042777.1	=	NC_064490.1	0
Chromosome 19	CM042778.1	=	NC_064491.1	0
Chromosome 20	CM042779.1	=	NC_064492.1	0
Chromosome 21	CM042780.1	=	NC_064493.1	0
Chromosome 22	CM042781.1	=	NC_064494.1	0
Chromosome 23	CM042782.1	=	NC_064495.1	0
Chromosome 24	CM042783.1	=	NC_064496.1	0
Chromosome 25	CM042784.1	=	NC_064497.1	0
Chromosome 26	CM042785.1	=	NC_064498.1	0
Chromosome 27	CM042786.1	=	NC_064499.1	0
Chromosome 28	CM042787.1	=	NC_064500.1	0
unplaced	n/a	n/a	n/a	1,979

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,133,995,980	2,007	2,131,867,286	130,956,235	744
Chromosome 1	345,741,823	1	345,415,652	345,741,823	108
Chromosome 2	265,322,328	1	265,202,600	265,322,328	44
Chromosome 3	208,076,192	1	207,966,292	208,076,192	42
Chromosome 4	135,629,317	1	135,499,196	135,629,317	20
Chromosome 5	130,956,235	1	130,950,182	130,956,235	13
Chromosome 6	128,663,002	1	128,551,491	128,663,002	32
Chromosome 7	123,309,685	1	123,271,336	123,309,685	9
Chromosome 8	108,535,684	1	108,491,334	108,535,684	14
Chromosome 9	101,339,746	1	101,271,992	101,339,746	13
Chromosome 10	85,280,247	1	85,271,263	85,280,247	2
Chromosome 11	76,526,220	1	76,495,253	76,526,220	13
Chromosome 12	43,187,907	1	43,150,183	43,187,907	5
Chromosome 13	38,195,045	1	37,962,132	38,195,045	64
Chromosome 14	35,787,611	1	35,731,190	35,787,611	12
Chromosome 15	33,476,432	1	33,471,384	33,476,432	3
Chromosome 16	25,691,690	1	25,676,114	25,691,690	5
Chromosome 17	24,699,093	1	24,694,297	24,699,093	3
Chromosome 18	23,648,662	1	23,637,017	23,648,662	2
Chromosome 19	20,213,798	1	20,194,853	20,213,798	6
Chromosome 20	19,043,113	1	19,042,583	19,043,113	3
Chromosome 21	18,994,806	1	18,980,378	18,994,806	1
Chromosome 22	17,930,880	1	17,835,227	17,930,880	19
Chromosome 23	16,784,396	1	16,731,301	16,784,396	7
Chromosome 24	16,651,684	1	16,627,469	16,651,684	9
Chromosome 25	16,370,603	1	16,363,569	16,370,603	5
Chromosome 26	13,314,792	1	13,267,181	13,314,792	8
Chromosome 27	12,552,392	1	12,544,894	12,552,392	10
Chromosome 28	5,339,423	1	5,336,835	5,339,423	12
unplaced	42,733,174	1,979	42,234,088	124,343	260

Assembly

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GSC_CCare_1.0

See Genome Information for Caretta caretta

Pathogen Detection Resources

History (Show revision history)

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Assembly Unit Name
Primary Assembly
non-nuclear