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Source database (GenBank or RefSeq) File type

Puncia_PCG_1.0

Organism name:

Panthera uncia (snow leopard)

Isolate:

11264

Sex:

female

BioSample:

SAMN13911153

BioProject:

PRJNA602938

Submitter:

Stanford University

Date:

2022/06/16

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_023721935.1 (latest)

RefSeq assembly accession:

GCF_023721935.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAJAOB01

Assembly method:

Supernova v. 2.1.1

Expected final version:

yes

Genome coverage:

31.94x

Sequencing technology:

Illumina HiSeq

IDs: 12982831 [UID] 33920548 [GenBank] 34826708 [RefSeq]

See Genome Information for Panthera uncia

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_023721935.1	≠	GCF_023721935.1	Puncia_PCG_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,433,989,369
Total ungapped length	2,416,857,980
Gaps between scaffolds	0
Number of scaffolds	2,636
Scaffold N50	112,063,229
Scaffold L50	9
Number of contigs	26,422
Contig N50	179,517
Contig L50	3,996
Total number of chromosomes and plasmids	20
Number of component sequences (WGS or clone)	2,636

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome A1	n/a	n/a	n/a	2
Chromosome A3	n/a	n/a	n/a	2
Chromosome B2	n/a	n/a	n/a	2
Chromosome B3	n/a	n/a	n/a	2
Chromosome C1	n/a	n/a	n/a	2
Chromosome D3	n/a	n/a	n/a	2
Chromosome E2	n/a	n/a	n/a	2
Chromosome A2	CM043157.1	=	NC_064816.1	0
Chromosome B1	CM043153.1	=	NC_064811.1	0
Chromosome B4	CM043162.1	=	NC_064809.1	0
Chromosome C2	CM043158.1	=	NC_064810.1	0
Chromosome D1	CM043154.1	=	NC_064808.1	0
Chromosome D2	CM043159.1	=	NC_064818.1	0
Chromosome D4	CM043163.1	=	NC_064807.1	0
Chromosome E1	CM043155.1	=	NC_064814.1	0
Chromosome E3	CM043161.1	=	NC_064815.1	0
Chromosome F1	CM043156.1	=	NC_064813.1	0
Chromosome F2	CM043160.1	=	NC_064812.1	0
Chromosome X	CM043164.1	=	NC_064817.1	0
unplaced	n/a	n/a	n/a	2,609

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	2,433,972,596	2,635	2,416,841,207	112,063,229	23,786	0
Chromosome A1	AllAssembled moleculeUnlocalized scaffolds	232,551,6460232,551,646	202	231,492,2890231,492,289	152,388,6390152,388,639	2,02702,027	000
Chromosome A3	AllAssembled moleculeUnlocalized scaffolds	137,215,7740137,215,774	202	136,335,5760136,335,576	96,734,274096,734,274	1,40201,402	000
Chromosome B2	AllAssembled moleculeUnlocalized scaffolds	147,081,9730147,081,973	202	146,338,0030146,338,003	119,682,5070119,682,507	1,31801,318	000
Chromosome B3	AllAssembled moleculeUnlocalized scaffolds	143,217,2710143,217,271	202	142,238,7130142,238,713	136,535,5000136,535,500	1,48601,486	000
Chromosome C1	AllAssembled moleculeUnlocalized scaffolds	216,674,5630216,674,563	202	215,468,8670215,468,867	112,063,2290112,063,229	2,07802,078	000
Chromosome D3	AllAssembled moleculeUnlocalized scaffolds	91,046,822091,046,822	202	90,373,152090,373,152	85,774,899085,774,899	9960996	000
Chromosome E2	AllAssembled moleculeUnlocalized scaffolds	58,820,648058,820,648	202	58,042,608058,042,608	32,936,584032,936,584	8240824	000
Chromosome A2	Assembled molecule	163,073,779	1	162,107,928	163,073,779	1,652	0
Chromosome B1	Assembled molecule	200,714,965	1	199,810,400	200,714,965	1,734	0
Chromosome B4	Assembled molecule	138,478,671	1	137,681,189	138,478,671	1,301	0
Chromosome C2	Assembled molecule	155,550,013	1	154,769,423	155,550,013	1,370	0
Chromosome D1	Assembled molecule	111,050,086	1	110,029,187	111,050,086	1,125	0
Chromosome D2	Assembled molecule	85,195,245	1	84,740,135	85,195,245	893	0
Chromosome D4	Assembled molecule	91,839,303	1	90,896,302	91,839,303	974	0
Chromosome E1	Assembled molecule	61,834,490	1	61,387,108	61,834,490	830	0
Chromosome E3	Assembled molecule	35,415,778	1	35,112,948	35,415,778	511	0
Chromosome F1	Assembled molecule	67,650,000	1	67,131,500	67,650,000	719	0
Chromosome F2	Assembled molecule	82,055,714	1	81,683,024	82,055,714	693	0
Chromosome X	Assembled molecule	122,675,367	1	120,013,817	122,675,367	1,445	0
unplaced	Assembled molecule	91,830,488	2,609	91,189,038	48,231	408	0

Assembly

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Puncia_PCG_1.0

See Genome Information for Panthera uncia

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear