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carGib1.2-hapl.c

Organism name:
Carassius gibelio (silver crucian carp)
Infraspecific name:
Ecotype: wild population from Czech Republic
Isolate:
Cgi1373
Sex:
female
BioSample:
SAMN23046545
BioProject:
PRJNA780760
Submitter:
IGB Leibniz-Institute of Freshwater Ecology and Inland Fisheries
Date:
2022/06/16
Assembly type:
haploid (haplotype 3)
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_023724105.1 (latest)
RefSeq assembly accession:
GCF_023724105.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAJQLC01
Assembly method:
hifiasm unitigger v. 0.15.1-r329; 3D-dna v. 180922
Expected final version:
yes
Genome coverage:
45.0x
Sequencing technology:
PacBio HiFi; OmniC Illumina reads
Linked assemblies:
GCA_023724075.1 (haplotype 1)
GCA_023724085.1 (haplotype 2)

IDs: 12982861 [UID] 33920618 [GenBank] 37758368 [RefSeq]

See Genome Information for Carassius gibelio

Pathogen Detection Resources

There are 4 assemblies for this organism

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History (Show revision history)

Comment

This assembly is one haplotype of three that represent the triploid organism Carassius gibelio (silver crucian carp). For this triploid organism, Haplotypes 1, 2, and 3 represent Haplotypes a, b, and c respectively.

Global statistics

Total sequence length1,583,351,535
Total ungapped length1,582,055,447
Total number of chromosomes and plasmids51

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_023724115.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome A1CM043215.1=NC_068371.1
Chromosome A2CM043217.1=NC_068372.1
Chromosome A3CM043219.1=NC_068373.1
Chromosome A4CM043221.1=NC_068374.1
Chromosome A5CM043223.1=NC_068375.1
Chromosome A6CM043225.1=NC_068376.1
Chromosome A7CM043227.1=NC_068377.1
Chromosome A8CM043229.1=NC_068378.1
Chromosome A9CM043231.1=NC_068379.1
Chromosome A10CM043233.1=NC_068380.1
Chromosome A11CM043235.1=NC_068381.1
Chromosome A12CM043237.1=NC_068382.1
Chromosome A13CM043239.1=NC_068383.1
Chromosome A14CM043241.1=NC_068384.1
Chromosome A15CM043243.1=NC_068385.1
Chromosome A16CM043245.1=NC_068386.1
Chromosome A17CM043247.1=NC_068387.1
Chromosome A18CM043249.1=NC_068388.1
Chromosome A19CM043251.1=NC_068389.1
Chromosome A20CM043253.1=NC_068390.1
Chromosome A21CM043255.1=NC_068391.1
Chromosome A22CM043257.1=NC_068392.1
Chromosome A23CM043259.1=NC_068393.1
Chromosome A24CM043261.1=NC_068394.1
Chromosome A25CM043263.1=NC_068395.1
Chromosome B1CM043216.1=NC_068396.1
Chromosome B2CM043218.1=NC_068397.1
Chromosome B3CM043220.1=NC_068398.1
Chromosome B4CM043222.1=NC_068399.1
Chromosome B5CM043224.1=NC_068400.1
Chromosome B6CM043226.1=NC_068401.1
Chromosome B7CM043228.1=NC_068402.1
Chromosome B8CM043230.1=NC_068403.1
Chromosome B9CM043232.1=NC_068404.1
Chromosome B10CM043234.1=NC_068405.1
Chromosome B11CM043236.1=NC_068406.1
Chromosome B12CM043238.1=NC_068407.1
Chromosome B13CM043240.1=NC_068408.1
Chromosome B14CM043242.1=NC_068409.1
Chromosome B15CM043244.1=NC_068410.1
Chromosome B16CM043246.1=NC_068411.1
Chromosome B17CM043248.1=NC_068412.1
Chromosome B18CM043250.1=NC_068413.1
Chromosome B19CM043252.1=NC_068414.1
Chromosome B20CM043254.1=NC_068415.1
Chromosome B21CM043256.1=NC_068416.1
Chromosome B22CM043258.1=NC_068417.1
Chromosome B23CM043260.1=NC_068418.1
Chromosome B24CM043262.1=NC_068419.1
Chromosome B25CM043264.1=NC_068420.1

Assembly statistics

MoleculeTotal
Length
All1,583,334,954
Chromosome A139,279,431
Chromosome A231,625,495
Chromosome A334,136,370
Chromosome A436,646,276
Chromosome A539,969,342
Chromosome A631,924,567
Chromosome A742,706,565
Chromosome A828,723,537
Chromosome A931,188,138
Chromosome A1027,399,512
Chromosome A1126,914,836
Chromosome A1225,917,584
Chromosome A1329,821,524
Chromosome A1425,976,202
Chromosome A1526,532,932
Chromosome A1631,776,151
Chromosome A1727,423,072
Chromosome A1830,677,984
Chromosome A1930,891,682
Chromosome A2028,956,650
Chromosome A2125,507,417
Chromosome A2226,217,247
Chromosome A2326,107,217
Chromosome A2425,190,352
Chromosome A2520,556,341
Chromosome B137,136,340
Chromosome B232,334,160
Chromosome B355,340,887
Chromosome B428,347,954
Chromosome B543,513,016
Chromosome B630,194,014
Chromosome B742,201,968
Chromosome B831,783,460
Chromosome B933,116,744
Chromosome B1026,665,912
Chromosome B1126,335,503
Chromosome B1227,298,517
Chromosome B1330,443,710
Chromosome B1429,474,200
Chromosome B1529,401,530
Chromosome B1632,370,375
Chromosome B1729,402,442
Chromosome B1832,265,897
Chromosome B1937,456,279
Chromosome B2029,114,643
Chromosome B2129,479,074
Chromosome B2255,532,955
Chromosome B2329,651,998
Chromosome B2425,582,522
Chromosome B2526,824,430
MoleculeTotal
Length
Mitochondrion MT16,581