iqSchGreg1.2

Organism name:: Schistocerca gregaria (desert locust)
Isolate:: iqSchGreg1
Sex:: male
BioSample:: SAMN23383904
BioProject:: PRJNA782545
Submitter:: United States Department of Agriculture
Date:: 2022/06/24
Assembly type:: haploid (principal pseudohaplotype of diploid)
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_023897955.2 (latest)
RefSeq assembly accession:: GCF_023897955.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JAKZLS01
Assembly method:: HiFiASM v. 0.13-r308
Expected final version:: yes
Genome coverage:: 41x
Sequencing technology:: PacBio Sequel

IDs: 13391531 [UID] 34947138 [GenBank] 35005948 [RefSeq]

See Genome Information for Schistocerca gregaria

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_023897955.2	=	GCF_023897955.1	iqSchGreg1.2	Chromosome	Latest GenBank, Latest RefSeq
GCA_023897955.1	n/a	n/a	iqSchGreg1.1	Chromosome	Replaced GenBank

Comment

In July 2022 111 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length	8,742,434,016
Total ungapped length	8,742,402,816
Gaps between scaffolds	0
Number of scaffolds	1,475
Scaffold N50	791,150,472
Scaffold L50	5
Number of contigs	1,787
Contig N50	44,584,537
Contig L50	54
Total number of chromosomes and plasmids	13
Number of component sequences (WGS or clone)	1,475

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM043598.1	=	NC_064920.1	0
Chromosome 2	CM043599.1	=	NC_064921.1	0
Chromosome 3	CM043600.1	=	NC_064922.1	0
Chromosome 4	CM043601.1	=	NC_064923.1	0
Chromosome 5	CM043602.1	=	NC_064924.1	0
Chromosome 6	CM043603.1	=	NC_064925.1	0
Chromosome 7	CM043604.1	=	NC_064926.1	0
Chromosome 8	CM043605.1	=	NC_064927.1	0
Chromosome 9	CM043606.1	=	NC_064928.1	0
Chromosome 10	CM043607.1	=	NC_064929.1	0
Chromosome 11	CM043608.1	=	NC_064930.1	0
Chromosome X	CM043609.1	=	NC_064931.1	0
unplaced	n/a	n/a	n/a	1,462

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	8,742,418,402	1,474	8,742,387,202	791,150,472	312
Chromosome 1	1,209,568,729	1	1,209,566,229	1,209,568,729	25
Chromosome 2	1,055,696,580	1	1,055,693,880	1,055,696,580	27
Chromosome 3	960,491,202	1	960,487,502	960,491,202	37
Chromosome 4	791,150,472	1	791,148,572	791,150,472	19
Chromosome 5	676,154,743	1	676,152,743	676,154,743	20
Chromosome 6	594,873,984	1	594,872,684	594,873,984	13
Chromosome 7	574,732,873	1	574,731,573	574,732,873	13
Chromosome 8	510,884,443	1	510,883,043	510,884,443	14
Chromosome 9	263,615,207	1	263,614,107	263,615,207	11
Chromosome 10	224,719,788	1	224,716,888	224,719,788	29
Chromosome 11	157,018,166	1	157,016,666	157,018,166	15
Chromosome X	874,623,940	1	874,615,040	874,623,940	89
unplaced	848,888,275	1,462	848,888,275	4,441,475	0

Assembly

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iqSchGreg1.2

See Genome Information for Schistocerca gregaria

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear