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mSunEtr1.pri.cur

Organism name:
Suncus etruscus (white-toothed pygmy shrew)
Isolate:
mSunEtr1
Sex:
male
BioSample:
SAMN28420931
BioProject:
PRJNA838699
Submitter:
Vertebrate Genomes Project
Date:
2022/07/06
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_024139225.1 (latest)
RefSeq assembly accession:
GCF_024139225.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAMYDX01
Assembly method:
FALCON v. 2.0.2; FALCON-Unzip v. 8.0.1; purge_dups v. 1.0.0; scaff10x v. 2.0.3; bionano solve v. 3.4.0; salsa v. 2.2; gcpp v. 2.0.2; merfin v. 1.0; freebayes v. 1.3.1
Expected final version:
no
Genome coverage:
142.65x
Sequencing technology:
PacBio Sequel CLR; 10X linked reads; Bionano DLS; Arima Hi-C v1
Linked assembly:
GCA_024140225.1 (alternate pseudohaplotype of diploid)

IDs: 13211661 [UID] 34529468 [GenBank] 34907378 [RefSeq]

See Genome Information for Suncus etruscus

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,471,666,657
Total ungapped length2,461,022,602
Gaps between scaffolds0
Number of scaffolds147
Scaffold N50131,952,995
Scaffold L508
Number of contigs1,154
Contig N505,042,816
Contig L50133
Total number of chromosomes and plasmids22
Number of component sequences (WGS or clone)147

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_024139255.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM043972.1=NC_064848.10
Chromosome 2CM043973.1=NC_064849.10
Chromosome 3CM043974.1=NC_064850.10
Chromosome 4CM043975.1=NC_064851.10
Chromosome 5CM043976.1=NC_064852.10
Chromosome 6CM043977.1=NC_064853.10
Chromosome 7CM043978.1=NC_064854.10
Chromosome 8CM043979.1=NC_064855.10
Chromosome 9CM043980.1=NC_064856.10
Chromosome 10CM043981.1=NC_064857.10
Chromosome 11CM043982.1=NC_064858.10
Chromosome 12CM043983.1=NC_064859.10
Chromosome 13CM043984.1=NC_064860.11
Chromosome 14CM043985.1=NC_064861.10
Chromosome 15CM043986.1=NC_064862.118
Chromosome 16CM043987.1=NC_064863.10
Chromosome 17CM043988.1=NC_064864.10
Chromosome 18CM043989.1=NC_064865.10
Chromosome 19CM043990.1=NC_064866.10
Chromosome 20CM043991.1=NC_064867.10
Chromosome XCM043992.1=NC_064868.126
Chromosome YCM043993.1=NC_064869.13
unplacedn/an/an/a77

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,471,666,6571472,461,022,602131,952,9951,0070
Chromosome 1Assembled molecule208,244,7411208,232,723208,244,7411100
Chromosome 2Assembled molecule171,222,3261170,929,140171,222,326840
Chromosome 3Assembled molecule170,948,0701170,544,303170,948,070390
Chromosome 4Assembled molecule168,485,6451168,295,751168,485,645780
Chromosome 5Assembled molecule157,105,2551156,728,009157,105,255450
Chromosome 6Assembled molecule137,512,1081137,261,541137,512,108270
Chromosome 7Assembled molecule131,952,9951131,690,127131,952,995510
Chromosome 8Assembled molecule124,860,7521124,225,933124,860,752680
Chromosome 9Assembled molecule116,298,6521115,617,719116,298,652310
Chromosome 10Assembled molecule113,073,2051112,920,820113,073,205300
Chromosome 11Assembled molecule109,269,1301109,218,363109,269,130360
Chromosome 12Assembled molecule104,750,9401104,478,016104,750,940510
Chromosome 13AllAssembled moleculeUnlocalized scaffolds99,928,64599,890,54138,10421199,418,53099,380,42638,10499,890,54199,890,54138,10428280000
Chromosome 14Assembled molecule97,742,847197,740,41897,742,847220
Chromosome 15AllAssembled moleculeUnlocalized scaffolds95,736,55893,472,1982,264,3601911894,647,81092,389,1822,258,62893,472,19893,472,198156,043493415000
Chromosome 16Assembled molecule87,454,589186,387,42287,454,589560
Chromosome 17Assembled molecule76,877,584176,584,86876,877,584110
Chromosome 18Assembled molecule64,036,631163,843,15664,036,631170
Chromosome 19Assembled molecule44,859,089144,681,33844,859,089230
Chromosome 20Assembled molecule44,563,896144,005,20244,563,896300
Chromosome XAllAssembled moleculeUnlocalized scaffolds142,597,157131,976,40310,620,75427126139,428,830130,335,8679,092,963131,976,403131,976,4032,772,1881066937000
Chromosome YAllAssembled moleculeUnlocalized scaffolds1,788,0431,388,264399,7794131,788,0431,388,264399,7791,388,2641,388,264172,944000000
unplacedAssembled molecule2,357,799772,354,54043,586150