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RoL_Ssco_1.1

Organism name:
Syngnathus scovelli (Gulf pipefish)
Infraspecific name:
Strain: Florida
Sex:
male
BioSample:
SAMN29251497
BioProject:
PRJNA851781
Submitter:
University of Idaho at Moscow
Date:
2022/07/12
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_024217435.2 (replaced)
RefSeq assembly accession:
GCF_024217435.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JANCRE01
Assembly method:
Hifiasm v. 0.16.1; Juicer v. 1.22.01; 3D-DNA v. 180922
Expected final version:
no
Genome coverage:
80.0x
Sequencing technology:
Pacbio Hi-Fi; Phase Genomics HiC

IDs: 13384151 [UID] 34931118 [GenBank] 34947958 [RefSeq]

See Genome Information for Syngnathus scovelli

History (Show revision history)

Comment

In July 2022 30 sequences were suppressed because they were found to be contaminants.
In Nov 2022 contig JANCRE010000328 was found to be mitochondrial and to contain duplicated sequence so the 3' end from nt 16472-31847 was removed.

Global statistics

Total sequence length428,432,749
Total ungapped length428,432,529
Gaps between scaffolds0
Number of scaffolds496
Scaffold N5017,337,441
Scaffold L5010
Number of contigs507
Contig N5015,551,623
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)496

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced428,432,749496428,432,52917,337,441110