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iyBomAffi1.2

Organism name:
Bombus affinis (bees)
Isolate:
iyBomAffi1
Sex:
male
BioSample:
SAMN27604106
BioProject:
PRJNA827177
Submitter:
United States Department of Agriculture
Date:
2022/08/05
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_024516045.2 (latest)
RefSeq assembly accession:
GCF_024516045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JALLPS01
Assembly method:
HiFiASM v. 0.11-r302
Expected final version:
yes
Genome coverage:
18.0x
Sequencing technology:
PacBio Sequel

IDs: 13779751 [UID] 35855318 [GenBank] 35926718 [RefSeq]

See Genome Information for Bombus affinis

Pathogen Detection Resources

History (Show revision history)

Comment

In September 2022 1 sequence was suppressed because it was found to be a contaminant.

Global statistics

Total sequence length365,123,313
Total ungapped length365,117,301
Gaps between scaffolds0
Number of scaffolds858
Scaffold N5012,331,690
Scaffold L5011
Number of contigs918
Contig N503,123,606
Contig L5028
Total number of chromosomes and plasmids18
Number of component sequences (WGS or clone)858

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_024516525.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM044937.1=NC_066344.10
Chromosome 2CM044938.1=NC_066345.10
Chromosome 3CM044939.1=NC_066346.10
Chromosome 4CM044940.1=NC_066347.10
Chromosome 5CM044941.1=NC_066348.10
Chromosome 6CM044942.1=NC_066349.10
Chromosome 7CM044943.1=NC_066350.10
Chromosome 8CM044944.1=NC_066351.10
Chromosome 9CM044945.1=NC_066352.10
Chromosome 10CM044946.1=NC_066353.10
Chromosome 11CM044947.1=NC_066354.10
Chromosome 12CM044948.1=NC_066355.10
Chromosome 13CM044949.1=NC_066356.10
Chromosome 14CM044950.1=NC_066357.10
Chromosome 15CM044951.1=NC_066358.10
Chromosome 16CM044952.1=NC_066359.10
Chromosome 17CM044953.1=NC_066360.10
Chromosome 18CM044954.1=NC_066361.10
unplacedn/an/an/a840

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All365,123,313858365,117,30112,331,690600
Chromosome 120,817,111120,816,59920,817,11150
Chromosome 218,846,686118,845,88618,846,68680
Chromosome 318,550,574118,549,97418,550,57460
Chromosome 418,236,796118,236,19618,236,79660
Chromosome 518,101,654118,101,45418,101,65420
Chromosome 618,069,528118,069,32818,069,52820
Chromosome 716,656,043116,655,74316,656,04330
Chromosome 817,007,233117,006,63317,007,23360
Chromosome 915,805,353115,805,15315,805,35320
Chromosome 1014,358,880114,358,68014,358,88020
Chromosome 1112,322,192112,322,09212,322,19210
Chromosome 1212,331,690112,331,09012,331,69060
Chromosome 1312,290,655112,290,55512,290,65510
Chromosome 1411,339,428111,339,22811,339,42820
Chromosome 1511,077,167111,077,16711,077,16700
Chromosome 168,748,18618,748,0868,748,18610
Chromosome 177,012,76717,012,5677,012,76720
Chromosome 186,026,77116,026,3716,026,77140
unplaced107,524,599840107,524,499225,80410