U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



iyBomHunt1.1

Organism name:
Bombus huntii (bees)
Isolate:
Logan2020A
Sex:
male
BioSample:
SAMN29759067
BioProject:
PRJNA858880
Submitter:
USDA-ARS Ag100Pest
Date:
2022/08/09
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_024542735.1 (latest)
RefSeq assembly accession:
GCF_024542735.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JANIEZ01
Assembly method:
HiFiASM v. 0.15.1-r329
Expected final version:
yes
Genome coverage:
83.0x
Sequencing technology:
PacBio Sequel

IDs: 13462131 [UID] 35124948 [GenBank] 35817168 [RefSeq]

See Genome Information for Bombus huntii

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length317,402,180
Total ungapped length317,398,380
Gaps between scaffolds0
Number of scaffolds225
Scaffold N5017,546,577
Scaffold L508
Number of contigs263
Contig N509,270,999
Contig L5013
Total number of chromosomes and plasmids18
Number of component sequences (WGS or clone)225

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_024542775.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM045110.1=NC_066238.10
Chromosome 2CM045111.1=NC_066239.10
Chromosome 3CM045112.1=NC_066240.10
Chromosome 4CM045113.1=NC_066241.10
Chromosome 5CM045114.1=NC_066242.10
Chromosome 6CM045115.1=NC_066243.10
Chromosome 7CM045116.1=NC_066244.10
Chromosome 8CM045117.1=NC_066245.10
Chromosome 9CM045118.1=NC_066246.10
Chromosome 10CM045119.1=NC_066247.10
Chromosome 11CM045120.1=NC_066248.10
Chromosome 12CM045121.1=NC_066249.10
Chromosome 13CM045122.1=NC_066250.10
Chromosome 14CM045123.1=NC_066251.10
Chromosome 15CM045124.1=NC_066252.10
Chromosome 16CM045125.1=NC_066253.10
Chromosome 17CM045126.1=NC_066254.10
Chromosome 18CM045127.1=NC_066255.10
unplacedn/an/an/a207

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All317,402,180225317,398,38017,546,577380
Chromosome 127,084,316127,084,11627,084,31620
Chromosome 222,111,346122,111,04622,111,34630
Chromosome 320,391,682120,391,18220,391,68250
Chromosome 419,629,233119,628,93319,629,23330
Chromosome 518,851,683118,851,48318,851,68320
Chromosome 618,553,484118,553,28418,553,48420
Chromosome 718,277,202118,276,90218,277,20230
Chromosome 817,546,577117,546,27717,546,57730
Chromosome 917,484,113117,483,91317,484,11320
Chromosome 1014,397,585114,397,38514,397,58520
Chromosome 1114,296,377114,296,27714,296,37710
Chromosome 1212,875,836112,875,63612,875,83620
Chromosome 1312,448,925112,448,82512,448,92510
Chromosome 1411,833,781111,833,78111,833,78100
Chromosome 1511,364,541111,364,54111,364,54100
Chromosome 168,892,80618,892,6068,892,80620
Chromosome 177,126,81717,126,4177,126,81740
Chromosome 186,099,40416,099,3046,099,40410
unplaced38,136,47220738,136,472406,97400