Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM2454274v1

Organism name:

Macaca thibetana thibetana (Pere David's macaque)

Isolate:

TM-01

Sex:

male

BioSample:

SAMN27068423

BioProject:

PRJNA821381

Submitter:

Sichuan university

Date:

2022/08/09

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_024542745.1 (latest)

RefSeq assembly accession:

GCF_024542745.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JANHGW01

Assembly method:

Flye v. 2.8.3; 3D-DNA v. 180922

Expected final version:

yes

Genome coverage:

86.0x

Sequencing technology:

PacBio Sequel

IDs: 13462151 [UID] 35125148 [GenBank] 35300378 [RefSeq]

See Genome Information for Macaca thibetana

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_024542745.1	≠	GCF_024542745.1	ASM2454274v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,822,383,045
Total ungapped length	2,822,200,445
Gaps between scaffolds	0
Number of scaffolds	623
Scaffold N50	150,623,419
Scaffold L50	8
Number of contigs	989
Contig N50	48,622,411
Contig L50	19
Total number of chromosomes and plasmids	22
Number of component sequences (WGS or clone)	623

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM045088.1	=	NC_065578.1	0
Chromosome 2	CM045089.1	=	NC_065579.1	0
Chromosome 3	CM045090.1	=	NC_065580.1	0
Chromosome 4	CM045091.1	=	NC_065581.1	0
Chromosome 5	CM045092.1	=	NC_065582.1	0
Chromosome 6	CM045093.1	=	NC_065583.1	0
Chromosome 7	CM045094.1	=	NC_065584.1	0
Chromosome 8	CM045095.1	=	NC_065585.1	0
Chromosome 9	CM045096.1	=	NC_065586.1	0
Chromosome 10	CM045097.1	=	NC_065587.1	0
Chromosome 11	CM045098.1	=	NC_065588.1	0
Chromosome 12	CM045099.1	=	NC_065589.1	0
Chromosome 13	CM045100.1	=	NC_065590.1	0
Chromosome 14	CM045101.1	=	NC_065591.1	0
Chromosome 15	CM045102.1	=	NC_065592.1	0
Chromosome 16	CM045103.1	=	NC_065593.1	0
Chromosome 17	CM045104.1	=	NC_065594.1	0
Chromosome 18	CM045105.1	=	NC_065595.1	0
Chromosome 19	CM045106.1	=	NC_065596.1	0
Chromosome 20	CM045107.1	=	NC_065597.1	0
Chromosome X	CM045108.1	=	NC_065598.1	0
Chromosome Y	CM045109.1	=	NC_065599.1	0
unplaced	n/a	n/a	n/a	601

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,822,383,045	623	2,822,200,445	150,623,419	366
Chromosome 1	220,358,725	1	220,349,225	220,358,725	19
Chromosome 2	194,429,148	1	194,420,648	194,429,148	17
Chromosome 3	185,122,172	1	185,108,672	185,122,172	27
Chromosome 4	168,803,367	1	168,789,867	168,803,367	27
Chromosome 5	185,943,000	1	185,939,000	185,943,000	8
Chromosome 6	176,721,289	1	176,716,689	176,721,289	10
Chromosome 7	167,492,677	1	167,481,177	167,492,677	23
Chromosome 8	142,076,180	1	142,072,680	142,076,180	7
Chromosome 9	129,816,729	1	129,796,729	129,816,729	40
Chromosome 10	96,753,397	1	96,738,897	96,753,397	29
Chromosome 11	129,602,141	1	129,599,141	129,602,141	6
Chromosome 12	128,411,040	1	128,401,040	128,411,040	20
Chromosome 13	107,078,569	1	107,076,569	107,078,569	4
Chromosome 14	126,288,235	1	126,285,235	126,288,235	6
Chromosome 15	110,318,000	1	110,316,000	110,318,000	4
Chromosome 16	77,953,001	1	77,943,501	77,953,001	19
Chromosome 17	93,559,444	1	93,549,444	93,559,444	20
Chromosome 18	72,771,733	1	72,771,233	72,771,733	1
Chromosome 19	56,679,013	1	56,665,513	56,679,013	27
Chromosome 20	75,716,955	1	75,711,955	75,716,955	10
Chromosome X	150,623,419	1	150,614,919	150,623,419	17
Chromosome Y	13,980,984	1	13,973,984	13,980,984	14
unplaced	11,883,827	601	11,878,327	42,574	11

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

ASM2454274v1

See Genome Information for Macaca thibetana

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics