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Source database (GenBank or RefSeq) File type

APGP_CSIRO_Bneo_wtdbg2-racon-allhic-juicebox.fasta_v2

Organism name:

Bactrocera neohumeralis (flies)

Isolate:

Rockhampton

BioSample:

SAMN28021317

BioProject:

PRJNA833907

Submitter:

Applied Genomics Initiative Consortium

Date:

2022/08/09

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_024586455.2 (latest)

RefSeq assembly accession:

GCF_024586455.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAMJQZ01

Assembly method:

wtdbg2 v. 2.5; racon v. 1.4.21; AllHiC v. 1.0

Expected final version:

yes

Genome coverage:

31.0x

Sequencing technology:

Oxford Nanopore PromethION; Illumina HiSeq

IDs: 13531151 [UID] 35299808 [GenBank] 35347298 [RefSeq]

See Genome Information for Bactrocera neohumeralis

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_024586455.2	≠	GCF_024586455.1	APGP_CSIRO_Bneo_wtdbg2-racon-allhic-juicebox.fasta_v2	Chromosome	Latest GenBank, Latest RefSeq
GCA_024586455.1	n/a	n/a	APGP_CSIRO_Bneo_wtdbg2-racon-allhic-juicebox.fasta	Chromosome	Replaced GenBank

Comment

In August 2022 520 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length	577,342,536
Total ungapped length	577,111,736
Gaps between scaffolds	0
Number of scaffolds	5,159
Scaffold N50	78,989,042
Scaffold L50	4
Number of contigs	7,440
Contig N50	986,177
Contig L50	105
Total number of chromosomes and plasmids	6
Number of component sequences (WGS or clone)	5,159

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 2	CM044974.1	=	NC_065919.1	0
Chromosome 3	CM044975.1	=	NC_065920.1	0
Chromosome 4	CM044976.1	=	NC_065921.1	0
Chromosome 5	CM044977.1	=	NC_065922.1	0
Chromosome 6	CM044978.1	=	NC_065923.1	0
unplaced	n/a	n/a	n/a	5,153

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	577,326,612	5,158	577,095,812	78,989,042	2,281
Chromosome 2	92,927,950	1	92,913,550	92,927,950	135
Chromosome 3	78,885,696	1	78,859,396	78,885,696	254
Chromosome 4	90,776,534	1	90,743,334	90,776,534	323
Chromosome 5	78,989,042	1	78,976,942	78,989,042	121
Chromosome 6	81,044,128	1	81,027,828	81,044,128	163
unplaced	154,703,262	5,153	154,574,762	26,044,763	1,285

Assembly

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APGP_CSIRO_Bneo_wtdbg2-racon-allhic-juicebox.fasta_v2

See Genome Information for Bactrocera neohumeralis

Pathogen Detection Resources

History (Show revision history)

Comment

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear