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ASM2460600v1

Organism name:
Acinetobacter sp. YH12068_T (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: YH12068_T
BioSample:
SAMN26993015
BioProject:
PRJNA820314
Submitter:
South China Agricultural University
Date:
2022/08/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_024606005.1 (latest)
RefSeq assembly accession:
GCF_024606005.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.1
Expected final version:
no
Genome coverage:
10.0x
Sequencing technology:
Oxford Nanopore

IDs: 13463811 [UID] 35130588 [GenBank] 35157748 [RefSeq]

See Genome Information for Acinetobacter sp. YH12068_T

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::08/25/2023 04:12:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,316
CDSs (total)::3,205
Genes (coding)::3,119
CDSs (with protein)::3,119
Genes (RNA)::111
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::86
ncRNAs::4
Pseudo Genes (total)::86
CDSs (without protein)::86
Pseudo Genes (ambiguous residues)::0 of 86
Pseudo Genes (frameshifted)::23 of 86
Pseudo Genes (incomplete)::56 of 86
Pseudo Genes (internal stop)::23 of 86
Pseudo Genes (multiple problems)::14 of 86
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,462,138
Total ungapped length3,462,138
Total number of chromosomes and plasmids6

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_024606025.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP094555.1=NZ_CP094555.1
Plasmid pYH12068-1CP094556.1=NZ_CP094556.1
Plasmid pYH12068-2CP094557.1=NZ_CP094557.1
Plasmid pYH12068-3CP094558.1=NZ_CP094558.1
Plasmid pYH12068-4CP094559.1=NZ_CP094559.1
Plasmid pYH12068-5CP094560.1=NZ_CP094560.1

Assembly statistics

MoleculeTotal
Length
All3,462,138
Chromosome 3,266,243
Plasmid pYH12068-1100,866
Plasmid pYH12068-261,481
Plasmid pYH12068-314,153
Plasmid pYH12068-410,660
Plasmid pYH12068-58,735

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter sp. YH12068_TAcinetobacter sp. YH12068_T

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_023499985.1Acinetobacter amyesiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.3187.5787.78

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna