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ASM2467909v1

Organism name:
Eriocheir sinensis (Chinese mitten crab)
Infraspecific name:
Breed: Jianghai 21
Sex:
male
BioSample:
SAMN19679052
BioProject:
PRJNA737102
Submitter:
Shanghai Ocean University
Date:
2022/08/16
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_024679095.1 (latest)
RefSeq assembly accession:
GCF_024679095.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAHNEI01
Assembly method:
NextDenovo v. 2.0-beta.1
Expected final version:
no
Genome coverage:
110.0x
Sequencing technology:
Oxford Nanopore PromethION; Illumina HiSeq

IDs: 13516261 [UID] 35250588 [GenBank] 36194578 [RefSeq]

See Genome Information for Eriocheir sinensis

Pathogen Detection Resources

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,765,827,443
Total ungapped length1,667,380,328
Gaps between scaffolds0
Number of scaffolds2,160
Scaffold N5016,975,517
Scaffold L5040
Number of contigs4,766
Contig N50717,335
Contig L50434
Total number of chromosomes and plasmids70
Number of component sequences (WGS or clone)2,160

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_024679345.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM045375.1=NC_066509.10
Chromosome 2CM045376.1=NC_066510.10
Chromosome 3CM045377.1=NC_066511.10
Chromosome 4CM045378.1=NC_066512.10
Chromosome 5CM045379.1=NC_066513.10
Chromosome 6CM045380.1=NC_066514.10
Chromosome 7CM045381.1=NC_066515.10
Chromosome 8CM045382.1=NC_066516.10
Chromosome 9CM045383.1=NC_066517.10
Chromosome 10CM045384.1=NC_066518.10
Chromosome 11CM045385.1=NC_066519.10
Chromosome 12CM045386.1=NC_066520.10
Chromosome 13CM045387.1=NC_066521.10
Chromosome 14CM045388.1=NC_066522.10
Chromosome 15CM045389.1=NC_066523.10
Chromosome 16CM045390.1=NC_066524.10
Chromosome 17CM045391.1=NC_066525.10
Chromosome 18CM045392.1=NC_066526.10
Chromosome 19CM045393.1=NC_066527.10
Chromosome 20CM045394.1=NC_066528.10
Chromosome 21CM045395.1=NC_066529.10
Chromosome 22CM045396.1=NC_066530.10
Chromosome 23CM045397.1=NC_066531.10
Chromosome 24CM045398.1=NC_066532.10
Chromosome 25CM045399.1=NC_066533.10
Chromosome 26CM045400.1=NC_066534.10
Chromosome 27CM045401.1=NC_066535.10
Chromosome 28CM045402.1=NC_066536.10
Chromosome 29CM045403.1=NC_066537.10
Chromosome 30CM045404.1=NC_066538.10
Chromosome 31CM045405.1=NC_066539.10
Chromosome 32CM045406.1=NC_066540.10
Chromosome 33CM045407.1=NC_066541.10
Chromosome 34CM045408.1=NC_066542.10
Chromosome 35CM045409.1=NC_066543.10
Chromosome 36CM045410.1=NC_066544.10
Chromosome 37CM045411.1=NC_066545.10
Chromosome 38CM045412.1=NC_066546.10
Chromosome 39CM045413.1=NC_066547.10
Chromosome 40CM045414.1=NC_066548.10
Chromosome 41CM045415.1=NC_066549.10
Chromosome 42CM045416.1=NC_066550.10
Chromosome 43CM045417.1=NC_066551.10
Chromosome 44CM045418.1=NC_066552.10
Chromosome 45CM045419.1=NC_066553.10
Chromosome 46CM045420.1=NC_066554.10
Chromosome 47CM045421.1=NC_066555.10
Chromosome 48CM045422.1=NC_066556.10
Chromosome 49CM045423.1=NC_066557.10
Chromosome 50CM045424.1=NC_066558.10
Chromosome 51CM045425.1=NC_066559.10
Chromosome 52CM045426.1=NC_066560.10
Chromosome 53CM045427.1=NC_066561.10
Chromosome 54CM045428.1=NC_066562.10
Chromosome 55CM045429.1=NC_066563.10
Chromosome 56CM045430.1=NC_066564.10
Chromosome 57CM045431.1=NC_066565.10
Chromosome 58CM045432.1=NC_066566.10
Chromosome 59CM045433.1=NC_066567.10
Chromosome 60CM045434.1=NC_066568.10
Chromosome 61CM045435.1=NC_066569.10
Chromosome 62CM045436.1=NC_066570.10
Chromosome 63CM045437.1=NC_066571.10
Chromosome 64CM045438.1=NC_066572.10
Chromosome 65CM045439.1=NC_066573.10
Chromosome 66CM045440.1=NC_066574.10
Chromosome 67CM045441.1=NC_066575.10
Chromosome 68CM045442.1=NC_066576.10
Chromosome 69CM045443.1=NC_066577.10
Chromosome 70CM045444.1=NC_066578.10
unplacedn/an/an/a2,090

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All1,765,827,4432,1601,667,380,32816,975,5172,6060
Chromosome 145,379,147140,413,95045,379,1471340
Chromosome 231,954,432129,951,13631,954,432580
Chromosome 329,173,192127,516,54329,173,192420
Chromosome 429,084,662125,869,39529,084,662740
Chromosome 528,108,396126,150,05528,108,396510
Chromosome 627,314,786123,479,92227,314,7861160
Chromosome 727,014,105125,482,76927,014,105710
Chromosome 825,820,439123,821,26325,820,439360
Chromosome 925,704,940123,923,76925,704,940550
Chromosome 1024,916,309123,429,93324,916,309360
Chromosome 1124,776,463122,679,88524,776,463670
Chromosome 1224,411,283122,796,04724,411,283340
Chromosome 1323,812,216122,096,13023,812,216380
Chromosome 1422,909,581121,708,98122,909,581240
Chromosome 1522,682,036122,271,25622,682,036160
Chromosome 1622,092,210120,552,00922,092,210470
Chromosome 1721,810,268121,021,84621,810,268210
Chromosome 1821,593,893120,784,12421,593,893230
Chromosome 1921,385,840120,608,87621,385,840480
Chromosome 2021,245,621119,744,85121,245,621640
Chromosome 2120,632,807119,666,70620,632,807320
Chromosome 2220,595,259120,080,66920,595,259330
Chromosome 2320,502,797118,042,22320,502,797830
Chromosome 2420,108,279118,952,47220,108,279400
Chromosome 2519,885,966118,319,08419,885,966280
Chromosome 2619,743,373118,882,79619,743,373400
Chromosome 2719,727,531119,151,79119,727,531230
Chromosome 2819,593,204119,107,82819,593,204180
Chromosome 2918,884,131117,078,12918,884,131420
Chromosome 3018,566,567117,642,28018,566,567330
Chromosome 3118,276,216117,692,69718,276,216130
Chromosome 3218,177,313116,977,21618,177,313330
Chromosome 3318,109,958117,722,85118,109,958170
Chromosome 3418,105,521117,916,22518,105,521200
Chromosome 3518,098,480117,607,83818,098,480120
Chromosome 3617,730,161117,372,28917,730,161300
Chromosome 3717,516,247117,217,17617,516,24790
Chromosome 3817,374,747116,165,14917,374,747240
Chromosome 3917,195,986116,915,83317,195,986110
Chromosome 4016,975,517115,936,15516,975,517200
Chromosome 4116,949,729116,151,30716,949,729310
Chromosome 4215,414,004115,081,56915,414,004540
Chromosome 4315,377,322114,728,66415,377,322210
Chromosome 4415,200,582114,954,97815,200,582140
Chromosome 4514,719,648113,385,08214,719,648360
Chromosome 4614,298,206114,166,02614,298,206200
Chromosome 4713,895,859112,532,95413,895,859360
Chromosome 4813,203,802112,895,86313,203,802170
Chromosome 4913,078,750112,511,55813,078,750290
Chromosome 5012,993,234111,979,11212,993,234250
Chromosome 5112,937,974112,450,41112,937,974210
Chromosome 5212,750,814112,070,37012,750,814200
Chromosome 5312,567,781111,875,43112,567,781380
Chromosome 5412,250,771111,319,33712,250,771230
Chromosome 5512,242,209111,914,51112,242,20990
Chromosome 5612,201,330111,111,82012,201,330220
Chromosome 5712,024,539111,467,62012,024,539330
Chromosome 5811,946,249111,404,14811,946,249150
Chromosome 5911,757,766111,643,19411,757,766130
Chromosome 6011,648,666111,144,46911,648,666150
Chromosome 6111,596,831111,092,39411,596,831220
Chromosome 6211,439,990110,897,99811,439,990240
Chromosome 6311,336,473110,894,14211,336,473190
Chromosome 6410,710,42119,400,29410,710,421370
Chromosome 6510,428,59419,706,13610,428,594220
Chromosome 6610,309,680110,100,84210,309,680190
Chromosome 6710,233,79119,771,63510,233,791110
Chromosome 688,892,71618,440,5678,892,716160
Chromosome 698,632,09918,246,5638,632,099270
Chromosome 707,952,46417,198,3007,952,464210
unplaced499,845,2702,090474,092,886445,1962800