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Source database (GenBank or RefSeq) File type

Ppap_2.1

Organism name:

Phlebotomus papatasi (flies)

Isolate:

Sex:

male

BioSample:

SAMN15793614

BioProject:

PRJNA858452

Submitter:

Baylor College of Medicine

Date:

2022/08/30

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_024763615.2 (latest)

RefSeq assembly accession:

GCF_024763615.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JANPWV01

Assembly method:

FALCON-Unzip v. SEP- 2020; HiC Juicer Aiden Lab v. MAY-2022

Expected final version:

yes

Genome coverage:

14.1x

Sequencing technology:

PacBio HiFi; Illumina; HiC

IDs: 16518931 [UID] 42399128 [GenBank] 42490518 [RefSeq]

See Genome Information for Phlebotomus papatasi

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_024763615.2	≠	GCF_024763615.1	Ppap_2.1	Chromosome	Latest GenBank, Latest RefSeq
GCA_024763615.1	n/a	n/a	Ppap_2.0	Chromosome	Replaced GenBank

Comment

The genome of individual M1 from the PPIS colony was sequenced by PacBio HiFi using the PacBio Ultralow input library prep, and additional material from the PPIS colony was used to generate HiC data for scaffolding the reads
In May ... 2023 89 sequences were suppressed because they were found to be contaminants.  more

Global statistics

Total sequence length	351,623,088
Total ungapped length	351,271,088
Gaps between scaffolds	0
Number of scaffolds	646
Scaffold N50	111,783,093
Scaffold L50	2
Number of contigs	1,350
Contig N50	926,603
Contig L50	124
Total number of chromosomes and plasmids	6
Number of component sequences (WGS or clone)	646

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM045752.1	=	NC_077222.1	0
Chromosome 2	CM045753.1	=	NC_077223.1	0
Chromosome 3	CM045754.1	=	NC_077224.1	0
Chromosome 4	CM045755.1	=	NC_077225.1	0
Chromosome 5	CM045756.1	=	NC_077226.1	0
unplaced	n/a	n/a	n/a	640

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	351,607,531	645	351,255,531	111,783,093	704
Chromosome 1	112,275,094	1	112,168,094	112,275,094	214
Chromosome 2	111,783,093	1	111,675,093	111,783,093	216
Chromosome 3	90,359,746	1	90,267,746	90,359,746	184
Chromosome 4	6,039,160	1	6,007,160	6,039,160	64
Chromosome 5	4,567,584	1	4,556,584	4,567,584	22
unplaced	26,582,854	640	26,580,854	96,916	4

Assembly

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Ppap_2.1

See Genome Information for Phlebotomus papatasi

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear