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Source database (GenBank or RefSeq) File type

USDA_Cmelo_AY_1.0

Organism name:

Cucumis melo (muskmelon)

Infraspecific name:

Cultivar: AY

BioSample:

SAMN29843731

BioProject:

PRJNA844271

Submitter:

USDA-ARS

Date:

2022/09/14

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_025177605.1 (latest)

RefSeq assembly accession:

GCF_025177605.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

JANHKN01

Assembly method:

HifiASM v. 0.5

Expected final version:

yes

Reference guided assembly:

GCA_000313045.1

Genome coverage:

44.0x

Sequencing technology:

PacBio HiFi Sequel II

IDs: 13779811 [UID] 35855858 [GenBank] 36516498 [RefSeq]

See Genome Information for Cucumis melo

Pathogen Detection Resources

There are 36 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_025177605.1	≠	GCF_025177605.1	USDA_Cmelo_AY_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	438,408,223
Total ungapped length	438,384,323
Gaps between scaffolds	0
Number of scaffolds	1,310
Scaffold N50	30,457,480
Scaffold L50	7
Number of contigs	1,549
Contig N50	10,465,369
Contig L50	14
Total number of chromosomes and plasmids	13
Number of component sequences (WGS or clone)	1,310

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM045832.1	=	NC_066857.1	0
Chromosome 2	CM045833.1	=	NC_066858.1	0
Chromosome 3	CM045834.1	=	NC_066859.1	0
Chromosome 4	CM045835.1	=	NC_066860.1	0
Chromosome 5	CM045836.1	=	NC_066861.1	0
Chromosome 6	CM045837.1	=	NC_066862.1	0
Chromosome 7	CM045838.1	=	NC_066863.1	0
Chromosome 8	CM045839.1	=	NC_066864.1	0
Chromosome 9	CM045840.1	=	NC_066865.1	0
Chromosome 10	CM045841.1	=	NC_066866.1	0
Chromosome 11	CM045842.1	=	NC_066867.1	0
Chromosome 12	CM045843.1	=	NC_066868.1	0
unplaced	n/a	n/a	n/a	1,297

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	438,252,206	1,309	438,228,306	30,457,480	239
Chromosome 1	38,270,727	1	38,269,327	38,270,727	14
Chromosome 2	26,397,991	1	26,395,391	26,397,991	26
Chromosome 3	30,920,030	1	30,918,930	30,920,030	11
Chromosome 4	34,915,228	1	34,913,328	34,915,228	19
Chromosome 5	30,457,480	1	30,456,380	30,457,480	11
Chromosome 6	37,776,005	1	37,771,505	37,776,005	45
Chromosome 7	30,119,832	1	30,116,732	30,119,832	31
Chromosome 8	33,939,611	1	33,938,211	33,939,611	14
Chromosome 9	25,250,733	1	25,248,333	25,250,733	24
Chromosome 10	29,352,977	1	29,351,577	29,352,977	14
Chromosome 11	33,996,364	1	33,995,064	33,996,364	13
Chromosome 12	28,492,740	1	28,491,040	28,492,740	17
unplaced	58,362,488	1,297	58,362,488	37,873	0

Assembly

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USDA_Cmelo_AY_1.0

See Genome Information for Cucumis melo

Pathogen Detection Resources

There are 36 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear