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Dgunungcola_SK_2

Organism name:
Drosophila gunungcola (fruit fly)
Infraspecific name:
Strain: Sukarami
Sex:
male
BioSample:
SAMN28191681
BioProject:
PRJNA837195
Submitter:
National Central University
Date:
2022/09/15
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_025200985.1 (latest)
RefSeq assembly accession:
GCF_025200985.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAMKOV01
Assembly method:
Canu v. 1.8; FALCON v. 1.1.5; Quickmerge v. 0.2; Arrow v. 2.3.3
Expected final version:
yes
Genome coverage:
66.2x
Sequencing technology:
PacBio Sequel

IDs: 13803261 [UID] 35913608 [GenBank] 39302228 [RefSeq]

See Genome Information for Drosophila gunungcola

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length189,841,955
Total ungapped length189,841,955
Gaps between scaffolds0
Number of scaffolds351
Scaffold N503,022,255
Scaffold L5011
Number of contigs351
Contig N503,022,255
Contig L5011
Total number of chromosomes and plasmids6
Number of component sequences (WGS or clone)351

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_025200995.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 2Ln/an/an/a5
Chromosome 2Rn/an/an/a11
Chromosome 3Ln/an/an/a6
Chromosome 3RCM045922.1=NC_069139.10
Chromosome Xn/an/an/a12
Chromosome Yn/an/an/a1
unplacedn/an/an/a315

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule189,841,955351189,841,9553,022,25500
Chromosome 2LAllAssembled moleculeUnlocalized scaffolds9,429,69909,429,6995059,429,69909,429,6993,708,69603,708,696000000
Chromosome 2RAllAssembled moleculeUnlocalized scaffolds25,376,848025,376,8481101125,376,848025,376,8482,522,41802,522,418000000
Chromosome 3LAllAssembled moleculeUnlocalized scaffolds27,042,916027,042,91660627,042,916027,042,9167,260,84507,260,845000000
Chromosome 3RAssembled molecule31,037,916131,037,91631,037,91600
Chromosome XAllAssembled moleculeUnlocalized scaffolds10,283,721010,283,7211201210,283,721010,283,721824,3010824,301000000
Chromosome YAllAssembled moleculeUnlocalized scaffolds739,9810739,981101739,9810739,981739,9810739,981000000
unplacedAssembled molecule85,930,87431585,930,874625,90300