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Source database (GenBank or RefSeq) File type

ASM2543408v3

Organism name:

Hippocampus zosterae (dwarf seahorse)

Infraspecific name:

Strain: Florida

Sex:

male

BioSample:

SAMN30156018

BioProject:

PRJNA851781

Submitter:

University of Idaho at Moscow

Date:

2022/09/29

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_025434085.3 (latest)

RefSeq assembly accession:

GCF_025434085.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JANTIC01

Assembly method:

Hifiasm v. 0.16.1

Expected final version:

Genome coverage:

80.0x

Sequencing technology:

Pacbio Hi-Fi; Phase Genomics HiC

IDs: 14287131 [UID] 37109028 [GenBank] 37262608 [RefSeq]

See Genome Information for Hippocampus zosterae

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_025434085.3	≠	GCF_025434085.1	ASM2543408v3	Chromosome	Latest GenBank, Latest RefSeq
GCA_025434085.2	n/a	n/a	ASM2543408v2	Chromosome	Replaced GenBank
GCA_025434085.1	n/a	n/a	ASM2543408v1	Chromosome	Replaced GenBank

Comment

In October 2022 216 sequences were suppressed because they were found to be contaminants.
In November 2022 13 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length	544,521,268
Total ungapped length	544,519,688
Gaps between scaffolds	0
Number of scaffolds	213
Scaffold N50	26,043,804
Scaffold L50	9
Number of contigs	292
Contig N50	22,513,697
Contig L50	10
Total number of chromosomes and plasmids	22
Number of component sequences (WGS or clone)	213

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM046402.1	=	NC_067451.1	0
Chromosome 2	CM046403.1	=	NC_067452.1	0
Chromosome 3	CM046404.1	=	NC_067453.1	0
Chromosome 4	CM046405.1	=	NC_067454.1	0
Chromosome 5	CM046406.1	=	NC_067455.1	0
Chromosome 6	CM046407.1	=	NC_067456.1	0
Chromosome 7	CM046408.1	=	NC_067457.1	0
Chromosome 8	CM046409.1	=	NC_067458.1	0
Chromosome 9	CM046410.1	=	NC_067459.1	0
Chromosome 10	CM046411.1	=	NC_067460.1	0
Chromosome 11	CM046412.1	=	NC_067461.1	0
Chromosome 12	CM046413.1	=	NC_067462.1	0
Chromosome 13	CM046414.1	=	NC_067463.1	0
Chromosome 14	CM046415.1	=	NC_067464.1	0
Chromosome 15	CM046416.1	=	NC_067465.1	0
Chromosome 16	CM046417.1	=	NC_067466.1	0
Chromosome 17	CM046418.1	=	NC_067467.1	0
Chromosome 18	CM046419.1	=	NC_067468.1	0
Chromosome 19	CM046420.1	=	NC_067469.1	0
Chromosome 20	CM046421.1	=	NC_067470.1	0
Chromosome 21	CM046422.1	=	NC_067471.1	0
unplaced	n/a	n/a	n/a	191

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	544,504,747	212	544,503,167	26,043,804	79
Chromosome 1	42,937,977	1	42,937,937	42,937,977	2
Chromosome 2	41,705,881	1	41,705,801	41,705,881	4
Chromosome 3	31,177,826	1	31,177,766	31,177,826	3
Chromosome 4	31,104,908	1	31,104,888	31,104,908	1
Chromosome 5	28,800,090	1	28,799,910	28,800,090	9
Chromosome 6	28,029,561	1	28,029,561	28,029,561	0
Chromosome 7	26,668,256	1	26,668,136	26,668,256	6
Chromosome 8	26,402,226	1	26,402,086	26,402,226	7
Chromosome 9	26,043,804	1	26,043,744	26,043,804	3
Chromosome 10	25,775,659	1	25,775,499	25,775,659	8
Chromosome 11	25,609,287	1	25,609,167	25,609,287	6
Chromosome 12	24,306,166	1	24,306,066	24,306,166	5
Chromosome 13	23,383,766	1	23,383,766	23,383,766	0
Chromosome 14	22,997,734	1	22,997,614	22,997,734	6
Chromosome 15	20,268,621	1	20,268,621	20,268,621	0
Chromosome 16	19,915,529	1	19,915,309	19,915,529	11
Chromosome 17	18,543,172	1	18,543,152	18,543,172	1
Chromosome 18	17,379,183	1	17,379,123	17,379,183	3
Chromosome 19	14,118,490	1	14,118,490	14,118,490	0
Chromosome 20	13,609,674	1	13,609,674	13,609,674	0
Chromosome 21	10,504,641	1	10,504,561	10,504,641	4
unplaced	25,222,296	191	25,222,296	1,100,971	0

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ASM2543408v3

See Genome Information for Hippocampus zosterae

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear