Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM2561291v2

Organism name:

Crassostrea angulata (Portugese oyster)

Isolate:

pt1a10

Sex:

female

BioSample:

SAMN29636088

BioProject:

PRJNA857752

Submitter:

Ocean University of China

Date:

2022/10/07

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_025612915.2 (latest)

RefSeq assembly accession:

GCF_025612915.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JANFPH01

Assembly method:

Hifiasm v. 0.16.0

Expected final version:

yes

Genome coverage:

76.3x

Sequencing technology:

PacBio Sequel

IDs: 14889101 [UID] 38513488 [GenBank] 38798538 [RefSeq]

See Genome Information for Crassostrea angulata

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_025612915.2	≠	GCF_025612915.1	ASM2561291v2	Chromosome	Latest GenBank, Latest RefSeq
GCA_025612915.1	n/a	n/a	ASM2561291v1	Chromosome	Replaced GenBank

Comment

In Dec 2022 JANFPH010000156 was suppressed because it was found to be a contaminant

Global statistics

Total sequence length	624,273,838
Total ungapped length	624,142,338
Gaps between scaffolds	0
Number of scaffolds	410
Scaffold N50	60,476,782
Scaffold L50	5
Number of contigs	673
Contig N50	10,870,631
Contig L50	18
Total number of chromosomes and plasmids	10
Number of component sequences (WGS or clone)	410

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM046776.1	=	NC_069111.1	0
Chromosome 2	CM046777.1	=	NC_069112.1	0
Chromosome 3	CM046778.1	=	NC_069113.1	0
Chromosome 4	CM046779.1	=	NC_069114.1	0
Chromosome 5	CM046780.1	=	NC_069115.1	0
Chromosome 6	CM046781.1	=	NC_069116.1	0
Chromosome 7	CM046782.1	=	NC_069117.1	0
Chromosome 8	CM046783.1	=	NC_069118.1	0
Chromosome 9	CM046784.1	=	NC_069119.1	0
Chromosome 10	CM046785.1	=	NC_069120.1	0
unplaced	n/a	n/a	n/a	400

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	624,273,838	410	624,142,338	60,476,782	263
Chromosome 1	57,608,718	1	57,604,218	57,608,718	9
Chromosome 2	81,655,936	1	81,624,436	81,655,936	63
Chromosome 3	58,148,000	1	58,145,000	58,148,000	6
Chromosome 4	51,822,500	1	51,809,000	51,822,500	27
Chromosome 5	61,934,658	1	61,922,158	61,934,658	25
Chromosome 6	61,759,399	1	61,754,899	61,759,399	9
Chromosome 7	60,847,761	1	60,842,761	60,847,761	10
Chromosome 8	60,476,782	1	60,465,782	60,476,782	22
Chromosome 9	39,826,282	1	39,811,782	39,826,282	29
Chromosome 10	56,228,760	1	56,223,760	56,228,760	10
unplaced	33,965,042	400	33,938,542	175,000	53

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

ASM2561291v2

See Genome Information for Crassostrea angulata

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics