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ASM2615363v1

Organism name:
Actinobacillus pleuropneumoniae (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AP_123
BioSample:
SAMN31602455
BioProject:
PRJNA898268
Submitter:
Statens Serum Institut
Date:
2022/11/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_026153635.1 (latest)
RefSeq assembly accession:
GCF_026153635.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.8
Expected final version:
yes
Genome coverage:
50.0x
Sequencing technology:
Oxford Nanopore MinION

IDs: 14395761 [UID] 37359708 [GenBank] 37388468 [RefSeq]

See Genome Information for Actinobacillus pleuropneumoniae

There are 88 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Norwegian University of Life Sciences
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/18/2023 04:41:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,337
CDSs (total)::2,252
Genes (coding)::2,171
CDSs (with protein)::2,171
Genes (RNA)::85
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::62
ncRNAs::4
Pseudo Genes (total)::81
CDSs (without protein)::81
Pseudo Genes (ambiguous residues)::0 of 81
Pseudo Genes (frameshifted)::29 of 81
Pseudo Genes (incomplete)::47 of 81
Pseudo Genes (internal stop)::15 of 81
Pseudo Genes (multiple problems)::8 of 81
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,390,416
Total ungapped length2,390,416
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_026153645.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP110664.1=NZ_CP110664.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,390,416

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Actinobacillus pleuropneumoniaeActinobacillus pleuropneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000178495.2Actinobacillus pleuropneumoniae serovar 1 str. 4074type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000178495.2Actinobacillus pleuropneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.1390.0992.88
Best-match type98.1390.0992.88

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna