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UHH_iyHylVolc1.0_haploid

Organism name:
Hylaeus volcanicus (bees)
Isolate:
JK05
Sex:
male
BioSample:
SAMN24175050
BioProject:
PRJNA789929
Submitter:
USDA-ARS
Date:
2022/11/22
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_026283585.1 (latest)
RefSeq assembly accession:
GCF_026283585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JANILQ01
Assembly method:
Supernova v. 2.1.1
Expected final version:
yes
Genome coverage:
47.8x
Sequencing technology:
Illumina HiSeq

IDs: 14466381 [UID] 37549158 [GenBank] 41391448 [RefSeq]

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length252,651,163
Total ungapped length247,139,443
Gaps between scaffolds0
Number of scaffolds1,869
Scaffold N5030,801,132
Scaffold L504
Number of contigs7,558
Contig N50120,369
Contig L50485
Total number of chromosomes and plasmids9
Number of component sequences (WGS or clone)1,869

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_026283595.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM047965.1=NC_071976.10
Chromosome 2CM047966.1=NC_071977.10
Chromosome 3CM047967.1=NC_071978.10
Chromosome 4CM047968.1=NC_071979.10
Chromosome 5CM047969.1=NC_071980.10
Chromosome 6CM047970.1=NC_071981.10
Chromosome 7CM047971.1=NC_071982.10
Chromosome 8CM047972.1=NC_071983.10
Chromosome 9CM047973.1=NC_071984.10
unplacedn/an/an/a1,860

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All252,651,1631,869247,139,44330,801,1325,6890
Chromosome 136,694,119135,863,90936,694,1196390
Chromosome 233,000,467132,416,09733,000,4676850
Chromosome 331,598,865131,221,27531,598,8653690
Chromosome 430,705,166130,007,35630,705,1666720
Chromosome 530,801,132130,339,98230,801,1325270
Chromosome 626,193,585125,634,54526,193,5856940
Chromosome 722,716,845122,141,98522,716,8457750
Chromosome 818,743,269118,606,73918,743,2692430
Chromosome 93,616,69813,166,7983,616,6983930
unplaced18,581,0171,86017,740,757151,2316920