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Source database (GenBank or RefSeq) File type

ASM2691426v1

Organism name:

Mya arenaria (softshell)

Isolate:

MELC-2E11

Sex:

female

BioSample:

SAMN30560132

BioProject:

PRJNA874712

Submitter:

Pacific Northwest Research Institute

Date:

2022/12/15

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_026914265.1 (latest)

RefSeq assembly accession:

GCF_026914265.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

Assembly method:

FALCON-Unzip v. pbbioconda-0.0.5

Expected final version:

yes

Genome coverage:

98.0x

Sequencing technology:

PacBio; Proximo Hi-C; 10x Chromium

IDs: 14892611 [UID] 38484878 [GenBank] 39258958 [RefSeq]

See Genome Information for Mya arenaria

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_026914265.1	≠	GCF_026914265.1	ASM2691426v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Status::Full annotation
Annotation Name::GCF_026914265.1-RS_2023_01
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
Annotation Software Version::10.1
URL Organism::Mya_arenaria
Annotation Method::Gnomon; cmsearch; tRNAscan-SE
Features Annotated::Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,216,086,238
Total ungapped length	1,216,032,370
Gaps between scaffolds	0
Number of scaffolds	18
Scaffold N50	71,556,252
Scaffold L50	8
Number of contigs	540
Contig N50	3,381,420
Contig L50	121
Total number of chromosomes and plasmids	18
Number of component sequences (WGS or clone)	18

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1	CP111012.1	=	NC_069122.1
Chromosome 2	CP111013.1	=	NC_069123.1
Chromosome 3	CP111014.1	=	NC_069124.1
Chromosome 4	CP111015.1	=	NC_069125.1
Chromosome 5	CP111016.1	=	NC_069126.1
Chromosome 6	CP111017.1	=	NC_069127.1
Chromosome 7	CP111018.1	=	NC_069128.1
Chromosome 8	CP111019.1	=	NC_069129.1
Chromosome 9	CP111020.1	=	NC_069130.1
Chromosome 10	CP111021.1	=	NC_069131.1
Chromosome 11	CP111022.1	=	NC_069132.1
Chromosome 12	CP111023.1	=	NC_069133.1
Chromosome 13	CP111024.1	=	NC_069134.1
Chromosome 14	CP111025.1	=	NC_069135.1
Chromosome 15	CP111026.1	=	NC_069136.1
Chromosome 16	CP111027.1	=	NC_069137.1
Chromosome 17	CP111028.1	=	NC_069138.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,216,068,291	17	1,216,014,423	71,556,252	522
Chromosome 1	63,369,314	1	63,366,612	63,369,314	21
Chromosome 2	71,556,252	1	71,554,029	71,556,252	26
Chromosome 3	93,038,574	1	93,034,862	93,038,574	35
Chromosome 4	82,781,202	1	82,778,090	82,781,202	29
Chromosome 5	80,778,335	1	80,772,700	80,778,335	42
Chromosome 6	83,634,289	1	83,632,084	83,634,289	26
Chromosome 7	71,406,691	1	71,402,492	71,406,691	39
Chromosome 8	75,813,843	1	75,811,225	75,813,843	30
Chromosome 9	76,804,856	1	76,800,843	76,804,856	31
Chromosome 10	74,570,910	1	74,568,150	74,570,910	30
Chromosome 11	71,350,902	1	71,347,097	71,350,902	38
Chromosome 12	70,040,107	1	70,037,168	70,040,107	34
Chromosome 13	69,354,228	1	69,351,096	69,354,228	25
Chromosome 14	64,373,224	1	64,370,684	64,373,224	29
Chromosome 15	58,022,990	1	58,021,050	58,022,990	24
Chromosome 16	52,865,736	1	52,861,963	52,865,736	35
Chromosome 17	56,306,838	1	56,304,278	56,306,838	28

Assembly

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ASM2691426v1

See Genome Information for Mya arenaria

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear