rHemCap1.1.pri

Organism name:: Hemicordylus capensis (graceful crag lizard)
Infraspecific name:: Ecotype: Gifberg
Sex:: male
BioSample:: SAMN31669488
BioProject:: PRJNA899811
Submitter:: University of Antwerp
Date:: 2022/12/28
Assembly type:: haploid (principal pseudohaplotype of diploid)
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_027244095.1 (latest)
RefSeq assembly accession:: GCF_027244095.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JAPMAM01
Assembly method:: hifiasm v. 0.16.1-r375; purge_dups v. 1.2.5; yahs v. 1.2a
Expected final version:: yes
Genome coverage:: 43x
Sequencing technology:: PacBio Sequel IIe; Dovetail Omni-C

IDs: 15197831 [UID] 39154358 [GenBank] 39880298 [RefSeq]

See Genome Information for Hemicordylus capensis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_027244095.1	=	GCF_027244095.1	rHemCap1.1.pri	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,294,751,221
Total ungapped length	2,294,742,821
Gaps between scaffolds	0
Number of scaffolds	44
Scaffold N50	359,646,233
Scaffold L50	3
Number of contigs	86
Contig N50	160,691,000
Contig L50	6
Total number of chromosomes and plasmids	17
Number of component sequences (WGS or clone)	44

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM050090.1	=	NC_069657.1	0
Chromosome 2	CM050091.1	=	NC_069658.1	0
Chromosome 3	CM050092.1	=	NC_069659.1	0
Chromosome 4	CM050093.1	=	NC_069660.1	0
Chromosome 5	CM050094.1	=	NC_069661.1	0
Chromosome 6	CM050095.1	=	NC_069662.1	0
Chromosome 7	CM050096.1	=	NC_069663.1	0
Chromosome 8	CM050097.1	=	NC_069664.1	0
Chromosome 9	CM050098.1	=	NC_069665.1	0
Chromosome 10	CM050099.1	=	NC_069666.1	0
Chromosome 11	CM050100.1	=	NC_069667.1	0
Chromosome 12	CM050101.1	=	NC_069668.1	0
Chromosome 13	CM050102.1	=	NC_069669.1	0
Chromosome 14	CM050103.1	=	NC_069670.1	0
Chromosome 15	CM050104.1	=	NC_069671.1	0
Chromosome 16	CM050105.1	=	NC_069672.1	0
Chromosome 17	CM050106.1	=	NC_069673.1	0
unplaced	n/a	n/a	n/a	27

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,294,751,221	44	2,294,742,821	359,646,233	42
Chromosome 1	459,129,262	1	459,127,662	459,129,262	8
Chromosome 2	429,459,696	1	429,458,496	429,459,696	6
Chromosome 3	359,646,233	1	359,645,633	359,646,233	3
Chromosome 4	322,367,141	1	322,366,541	322,367,141	3
Chromosome 5	260,285,503	1	260,285,503	260,285,503	0
Chromosome 6	171,665,751	1	171,665,351	171,665,751	2
Chromosome 7	38,650,604	1	38,650,204	38,650,604	2
Chromosome 8	33,073,465	1	33,073,265	33,073,465	1
Chromosome 9	32,584,128	1	32,583,928	32,584,128	1
Chromosome 10	30,405,871	1	30,405,471	30,405,871	2
Chromosome 11	29,363,974	1	29,363,774	29,363,974	1
Chromosome 12	24,441,388	1	24,440,388	24,441,388	5
Chromosome 13	24,048,327	1	24,048,327	24,048,327	0
Chromosome 14	23,465,029	1	23,464,429	23,465,029	3
Chromosome 15	20,671,332	1	20,671,132	20,671,332	1
Chromosome 16	17,390,101	1	17,389,701	17,390,101	2
Chromosome 17	16,604,388	1	16,604,188	16,604,388	1
unplaced	1,499,028	27	1,498,828	170,311	1

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rHemCap1.1.pri

See Genome Information for Hemicordylus capensis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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