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Source database (GenBank or RefSeq) File type

ilPloInte3.1

This assembly has been replaced. See current version

Organism name:

Plodia interpunctella (Indianmeal moth)

Isolate:

USDA-ARS_2022_Savannah

Sex:

male

BioSample:

SAMN23384295

BioProject:

PRJNA782555

Submitter:

United States Department of Agriculture

Date:

2023/01/09

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

GenBank assembly accession:

GCA_027563975.1 (replaced)

RefSeq assembly accession:

GCF_027563975.1 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAOPHU01

Assembly method:

HiFiAdapterFilt v. 2.0.0; HiFiASM v. 0.16.1; YaHS v. 1.1; Juicebox v. 1.11.08

Expected final version:

yes

Genome coverage:

77x

Sequencing technology:

PacBio Sequel

Linked assembly:

GCA_027563965.1 (alternate pseudohaplotype of diploid)

IDs: 15255721 [UID] 39301898 [GenBank] 40769508 [RefSeq]

See Genome Information for Plodia interpunctella

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_027563975.2	≠	GCF_027563975.2	ilPloInte3.2	Chromosome	Latest GenBank, Latest RefSeq
GCA_027563975.1	≠	GCF_027563975.1	ilPloInte3.1	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	291,332,140
Total ungapped length	291,329,540
Gaps between scaffolds	0
Number of scaffolds	46
Scaffold N50	10,311,656
Scaffold L50	13
Number of contigs	72
Contig N50	7,837,045
Contig L50	14
Total number of chromosomes and plasmids	32
Number of component sequences (WGS or clone)	46

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM050463.1	=	NC_071294.1	0
Chromosome 2	CM050464.1	=	NC_071295.1	0
Chromosome 3	CM050465.1	=	NC_071296.1	0
Chromosome 4	CM050466.1	=	NC_071297.1	0
Chromosome 5	CM050467.1	=	NC_071298.1	0
Chromosome 6	CM050468.1	=	NC_071299.1	0
Chromosome 7	CM050469.1	=	NC_071300.1	0
Chromosome 8	CM050470.1	=	NC_071301.1	0
Chromosome 9	CM050471.1	=	NC_071302.1	0
Chromosome 10	CM050472.1	=	NC_071303.1	0
Chromosome 11	CM050473.1	=	NC_071304.1	0
Chromosome 12	CM050474.1	=	NC_071305.1	0
Chromosome 13	CM050475.1	=	NC_071306.1	0
Chromosome 14	CM050476.1	=	NC_071307.1	0
Chromosome 15	CM050477.1	=	NC_071308.1	0
Chromosome 16	CM050478.1	=	NC_071309.1	0
Chromosome 17	CM050479.1	=	NC_071310.1	0
Chromosome 18	CM050480.1	=	NC_071311.1	0
Chromosome 19	CM050481.1	=	NC_071312.1	0
Chromosome 20	CM050482.1	=	NC_071313.1	0
Chromosome 21	CM050483.1	=	NC_071314.1	0
Chromosome 22	CM050484.1	=	NC_071315.1	0
Chromosome 23	CM050485.1	=	NC_071316.1	0
Chromosome 24	CM050486.1	=	NC_071317.1	0
Chromosome 25	CM050487.1	=	NC_071318.1	0
Chromosome 26	CM050488.1	=	NC_071319.1	0
Chromosome 27	CM050489.1	=	NC_071320.1	0
Chromosome 28	CM050490.1	=	NC_071321.1	0
Chromosome 29	CM050491.1	=	NC_071322.1	0
Chromosome 30	CM050492.1	=	NC_071323.1	0
Chromosome Z	CM050493.1	=	NC_071324.1	0
unplaced	n/a	n/a	n/a	14

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	291,316,876	45	291,314,276	10,311,656	26
Chromosome 1	12,651,329	1	12,651,329	12,651,329	0
Chromosome 2	12,514,254	1	12,514,254	12,514,254	0
Chromosome 3	12,058,152	1	12,058,152	12,058,152	0
Chromosome 4	11,860,281	1	11,860,281	11,860,281	0
Chromosome 5	11,816,407	1	11,816,107	11,816,407	3
Chromosome 6	11,742,873	1	11,742,873	11,742,873	0
Chromosome 7	11,250,008	1	11,249,908	11,250,008	1
Chromosome 8	11,154,766	1	11,154,766	11,154,766	0
Chromosome 9	10,950,421	1	10,950,221	10,950,421	2
Chromosome 10	10,819,065	1	10,818,865	10,819,065	2
Chromosome 11	10,557,213	1	10,557,113	10,557,213	1
Chromosome 12	10,311,656	1	10,311,656	10,311,656	0
Chromosome 13	10,270,740	1	10,270,740	10,270,740	0
Chromosome 14	10,242,959	1	10,242,859	10,242,959	1
Chromosome 15	10,226,474	1	10,226,374	10,226,474	1
Chromosome 16	10,032,087	1	10,031,887	10,032,087	2
Chromosome 17	9,622,388	1	9,622,288	9,622,388	1
Chromosome 18	9,556,803	1	9,556,703	9,556,803	1
Chromosome 19	9,133,681	1	9,133,681	9,133,681	0
Chromosome 20	8,452,395	1	8,452,295	8,452,395	1
Chromosome 21	8,343,125	1	8,343,025	8,343,125	1
Chromosome 22	7,177,523	1	7,177,423	7,177,523	1
Chromosome 23	7,121,933	1	7,121,833	7,121,933	1
Chromosome 24	7,096,637	1	7,096,437	7,096,637	2
Chromosome 25	7,039,582	1	7,039,582	7,039,582	0
Chromosome 26	6,338,195	1	6,337,895	6,338,195	3
Chromosome 27	5,272,335	1	5,272,335	5,272,335	0
Chromosome 28	4,762,607	1	4,762,407	4,762,607	2
Chromosome 29	4,686,454	1	4,686,454	4,686,454	0
Chromosome 30	3,976,440	1	3,976,440	3,976,440	0
Chromosome Z	180,911	1	180,911	180,911	0
unplaced	14,097,182	14	14,097,182	13,531,594	0

Assembly

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ilPloInte3.1

See Genome Information for Plodia interpunctella

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear