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mSorAra2.pri

Organism name:
Sorex araneus (European shrew)
Isolate:
mSorAra2
Sex:
male
BioSample:
SAMN32477717
BioProject:
PRJNA916523
Submitter:
Vertebrate Genomes Project
Date:
2023/01/09
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_027595985.1 (latest)
RefSeq assembly accession:
GCF_027595985.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAQBIA01
Assembly method:
HiFiasm v. 0.15.4 + galaxy0; purge_dups v. 1.2.5 + galaxy3; Bionano Solve v. 3.6.1 + galaxy2; gEVAL manual curtion v. 2022-07-07
Expected final version:
no
Genome coverage:
35.71x
Sequencing technology:
PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Hi-C v2
Linked assembly:
GCA_027595995.1 (alternate pseudohaplotype of diploid)

IDs: 15255891 [UID] 39302268 [GenBank] 42003698 [RefSeq]

See Genome Information for Sorex araneus

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,405,993,548
Total ungapped length2,393,049,584
Gaps between scaffolds0
Number of scaffolds65
Scaffold N50374,364,821
Scaffold L503
Number of contigs1,492
Contig N504,024,507
Contig L50182
Total number of chromosomes and plasmids12
Number of component sequences (WGS or clone)65

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_027596015.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM050716.1=NC_073302.10
Chromosome 2CM050717.1=NC_073303.10
Chromosome 3CM050718.1=NC_073304.10
Chromosome 4CM050719.1=NC_073305.10
Chromosome 5CM050720.1=NC_073306.10
Chromosome 6CM050721.1=NC_073307.10
Chromosome 7CM050722.1=NC_073308.10
Chromosome 8CM050723.1=NC_073309.10
Chromosome 9CM050724.1=NC_073310.10
Chromosome 10CM050725.1=NC_073311.10
Chromosome 11CM050726.1=NC_073312.10
Chromosome XCM050727.1=NC_073313.115
unplacedn/an/an/a38

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,405,993,548652,393,049,584374,364,8211,4270
Chromosome 1Assembled molecule452,700,4131451,607,338452,700,4131870
Chromosome 2Assembled molecule381,072,0011377,696,160381,072,0012410
Chromosome 3Assembled molecule239,582,0621238,335,362239,582,0621180
Chromosome 4Assembled molecule222,963,0431221,328,109222,963,0431400
Chromosome 5Assembled molecule216,565,9051215,989,457216,565,9051420
Chromosome 6Assembled molecule169,026,2261168,667,977169,026,2261320
Chromosome 7Assembled molecule77,757,119177,511,55477,757,119440
Chromosome 8Assembled molecule71,220,267170,306,39971,220,267450
Chromosome 9Assembled molecule69,197,946168,301,14169,197,946730
Chromosome 10Assembled molecule67,946,173167,846,62667,946,173390
Chromosome 11Assembled molecule59,732,558159,552,33559,732,558350
Chromosome XAllAssembled moleculeUnlocalized scaffolds377,102,873374,364,8212,738,05216115374,780,664372,189,1962,591,468374,364,821374,364,821246,03523020525000
unplacedAssembled molecule1,126,962381,126,46231,41610