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UM_Iind_1.1

Organism name:
Indicator indicator (birds)
Isolate:
239-I01
Sex:
female
BioSample:
SAMN31686289
BioProject:
PRJNA900296
Submitter:
Brood Parasitic Bird Genomes Consortium
Date:
2023/01/13
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_027791375.2 (latest)
RefSeq assembly accession:
GCF_027791375.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAQHUL01
Assembly method:
Flye v. 2.8.1-b1676
Expected final version:
no
Genome coverage:
254.0x
Sequencing technology:
PacBio CLR

IDs: 16122571 [UID] 41335258 [GenBank] 41472168 [RefSeq]

See Genome Information for Indicator indicator

Pathogen Detection Resources

History (Show revision history)

Comment

In March 2023 4 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length1,147,325,966
Total ungapped length1,147,270,488
Gaps between scaffolds0
Number of scaffolds896
Scaffold N5038,137,700
Scaffold L5010
Number of contigs1,452
Contig N508,710,530
Contig L5038
Total number of chromosomes and plasmids44
Number of component sequences (WGS or clone)1,452

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_027791385.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM051081.1=NC_072010.10
Chromosome 2CM051082.1=NC_072011.10
Chromosome 3CM051083.1=NC_072012.10
Chromosome 4CM051084.1=NC_072013.10
Chromosome 5CM051085.1=NC_072014.10
Chromosome 6CM051086.1=NC_072015.10
Chromosome 7CM051087.1=NC_072016.10
Chromosome 8CM051088.1=NC_072017.10
Chromosome 9CM051089.1=NC_072018.10
Chromosome 10CM051090.1=NC_072019.10
Chromosome 11CM051091.1=NC_072020.10
Chromosome 12CM051092.1=NC_072021.10
Chromosome 13CM051093.1=NC_072022.10
Chromosome 14CM051094.1=NC_072023.10
Chromosome 15CM051095.1=NC_072024.10
Chromosome 16CM051096.1=NC_072025.10
Chromosome 17CM051097.1=NC_072026.10
Chromosome 18CM051098.1=NC_072027.10
Chromosome 19CM051099.1=NC_072028.10
Chromosome 20CM051100.1=NC_072029.10
Chromosome 21CM051101.1=NC_072030.10
Chromosome 22CM051102.1=NC_072031.10
Chromosome 23CM051103.1=NC_072032.10
Chromosome 24CM051104.1=NC_072033.10
Chromosome 25CM051105.1=NC_072034.10
Chromosome 26CM051106.1=NC_072035.10
Chromosome 27CM051107.1=NC_072036.10
Chromosome 28CM051108.1=NC_072037.10
Chromosome 29CM051109.1=NC_072038.10
Chromosome 30CM051110.1=NC_072039.10
Chromosome 31CM051111.1=NC_072040.10
Chromosome 32CM051112.1=NC_072041.10
Chromosome 33CM051113.1=NC_072042.10
Chromosome 34CM051114.1=NC_072043.10
Chromosome 35CM051115.1=NC_072044.10
Chromosome 36CM051116.1=NC_072045.10
Chromosome 37CM051117.1=NC_072046.10
Chromosome 38CM051118.1=NC_072047.10
Chromosome 39CM051119.1=NC_072048.10
Chromosome 40CM051120.1=NC_072049.10
Chromosome 41CM051121.1=NC_072050.10
Chromosome 42CM051122.1=NC_072051.10
Chromosome WCM051123.1=NC_072052.176
Chromosome ZCM051124.1=NC_072053.147
unplacedn/an/an/a729

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,147,325,9668961,147,270,48838,137,7005560
Chromosome 1Assembled molecule131,414,8391131,411,939131,414,839290
Chromosome 2Assembled molecule67,196,222167,194,02267,196,222220
Chromosome 3Assembled molecule52,095,508152,093,90852,095,508160
Chromosome 4Assembled molecule48,194,501148,193,20148,194,501130
Chromosome 5Assembled molecule44,608,985144,607,58544,608,985140
Chromosome 6Assembled molecule44,565,347144,562,84744,565,347250
Chromosome 7Assembled molecule40,738,929140,737,92940,738,929100
Chromosome 8Assembled molecule38,589,972138,589,17238,589,97280
Chromosome 9Assembled molecule38,137,700138,135,82238,137,700200
Chromosome 10Assembled molecule36,299,142136,298,14236,299,142100
Chromosome 11Assembled molecule34,828,941134,828,14134,828,94180
Chromosome 12Assembled molecule29,703,819129,702,41929,703,819140
Chromosome 13Assembled molecule29,455,264129,454,46429,455,26480
Chromosome 14Assembled molecule27,173,247127,172,74727,173,24750
Chromosome 15Assembled molecule25,032,306125,030,80625,032,306150
Chromosome 16Assembled molecule24,324,854124,323,65424,324,854120
Chromosome 17Assembled molecule24,031,917124,030,31724,031,917160
Chromosome 18Assembled molecule21,583,439121,582,93921,583,43950
Chromosome 19Assembled molecule21,353,127121,352,92721,353,12720
Chromosome 20Assembled molecule20,493,906120,493,40620,493,90650
Chromosome 21Assembled molecule19,403,126119,402,52619,403,12660
Chromosome 22Assembled molecule18,674,468118,673,76818,674,46870
Chromosome 23Assembled molecule17,849,970117,848,97017,849,970100
Chromosome 24Assembled molecule17,321,102117,320,00217,321,102110
Chromosome 25Assembled molecule16,981,506116,981,00616,981,50650
Chromosome 26Assembled molecule16,877,167116,876,06716,877,167110
Chromosome 27Assembled molecule14,427,488114,427,48814,427,48800
Chromosome 28Assembled molecule13,737,826113,737,22613,737,82660
Chromosome 29Assembled molecule13,694,804113,693,80413,694,804100
Chromosome 30Assembled molecule13,634,036113,633,33613,634,03670
Chromosome 31Assembled molecule12,690,318112,690,21812,690,31810
Chromosome 32Assembled molecule9,978,52319,977,8239,978,52370
Chromosome 33Assembled molecule8,687,39718,686,6978,687,39770
Chromosome 34Assembled molecule8,380,68118,379,5818,380,681110
Chromosome 35Assembled molecule6,900,05816,899,2586,900,05880
Chromosome 36Assembled molecule5,330,81515,330,0155,330,81580
Chromosome 37Assembled molecule5,097,49615,096,2965,097,496120
Chromosome 38Assembled molecule4,950,83514,949,7354,950,835110
Chromosome 39Assembled molecule1,403,30111,403,3011,403,30100
Chromosome 40Assembled molecule1,225,70511,225,4051,225,70530
Chromosome 41Assembled molecule971,0111970,811971,01120
Chromosome 42Assembled molecule793,0871792,987793,08710
Chromosome WAllAssembled moleculeUnlocalized scaffolds7,179,039935,7906,243,249771767,176,739935,2906,241,449197,679935,790158,77723518000
Chromosome ZAllAssembled moleculeUnlocalized scaffolds90,242,94683,768,5936,474,3534814790,232,34683,759,2936,473,05383,768,59383,768,593241,9591069313000
unplacedAssembled molecule21,071,29672921,068,696101,768260