U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



nextdenovo-longstitch-racon4-pilon3

Organism name:
Oppia nitens (mites & ticks)
Isolate:
AA-2021
BioSample:
SAMN31865278
BioProject:
PRJNA905106
Submitter:
University of Saskatchewan
Date:
2023/01/30
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_028296485.1 (latest)
RefSeq assembly accession:
GCF_028296485.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAPNUB01
Assembly method:
NextDenovo v. 2.4.0
Expected final version:
no
Genome coverage:
440.0x
Sequencing technology:
Illumina HiSeq; Oxford Nanopore GridION

IDs: 15696201 [UID] 40314558 [GenBank] 41392298 [RefSeq]

See Genome Information for Oppia nitens

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length126,096,124
Total ungapped length125,433,609
Gaps between scaffolds0
Number of scaffolds65
Scaffold N504,409,514
Scaffold L507
Number of contigs67
Contig N504,409,514
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)65

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced126,096,12465125,433,6094,409,51420