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bRisTri1.patW.cur.20221130

Organism name:
Rissa tridactyla (black-legged kittiwake)
Isolate:
bRisTri1
Sex:
female
BioSample:
SAMN32104255
BioProject:
PRJNA909853
Submitter:
Vertebrate Genomes Project
Date:
2023/02/09
Assembly type:
haploid (paternal haplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_028500815.1 (latest)
RefSeq assembly accession:
GCF_028500815.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAPUFG01
Assembly method:
hifiasm v. 0.16.1+galaxy2; Bionano Solve v. 3.7.0+galaxy0; SALSA2 v. 2.3+galaxy2
Expected final version:
no
Genome coverage:
33.0x
Sequencing technology:
PacBio Sequel II HiFi; Bionano DLS; Arima Hi-C v2
Linked assembly:
GCA_028501385.1 (maternal haplotype of diploid)

IDs: 15856301 [UID] 40701278 [GenBank] 41112028 [RefSeq]

See Genome Information for Rissa tridactyla

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

This assemby has the curated paternal haplotype, plus the W chromosome from the curated maternal haplotype

Global statistics

Total sequence length1,353,621,101
Total ungapped length1,352,834,728
Gaps between scaffolds0
Number of scaffolds716
Scaffold N5088,208,671
Scaffold L505
Number of contigs999
Contig N5015,653,959
Contig L5024
Total number of chromosomes and plasmids32
Number of component sequences (WGS or clone)716

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_028500955.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM052985.1=NC_071466.10
Chromosome 2CM052986.1=NC_071467.10
Chromosome 3CM052987.1=NC_071468.10
Chromosome 4CM052988.1=NC_071469.10
Chromosome 5CM052989.1=NC_071470.10
Chromosome 6CM052990.1=NC_071471.10
Chromosome 7CM052991.1=NC_071472.10
Chromosome 8CM052992.1=NC_071473.10
Chromosome 9CM052993.1=NC_071474.10
Chromosome 10CM052994.1=NC_071475.10
Chromosome 11CM052995.1=NC_071476.10
Chromosome 12CM052996.1=NC_071477.10
Chromosome 13CM052997.1=NC_071478.10
Chromosome 14CM052998.1=NC_071479.10
Chromosome 15CM052999.1=NC_071480.10
Chromosome 16CM053000.1=NC_071481.10
Chromosome 17CM053001.1=NC_071482.10
Chromosome 18CM053002.1=NC_071483.10
Chromosome 19CM053003.1=NC_071484.10
Chromosome 20CM053004.1=NC_071485.10
Chromosome 21CM053005.1=NC_071486.10
Chromosome 22CM053006.1=NC_071487.10
Chromosome 23CM053007.1=NC_071488.10
Chromosome 24CM053008.1=NC_071489.11
Chromosome 25CM053009.1=NC_071490.10
Chromosome 26CM053010.1=NC_071491.10
Chromosome 27CM053011.1=NC_071492.10
Chromosome 28CM053012.1=NC_071493.10
Chromosome 29CM053013.1=NC_071494.10
Chromosome 30CM053014.1=NC_071495.10
Chromosome WCM053015.1=NC_071496.11
Chromosome ZCM053016.1=NC_071497.10
unplacedn/an/an/a682

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,353,621,1017161,352,834,72888,208,6712830
Chromosome 1Assembled molecule219,604,2641219,551,457219,604,264220
Chromosome 2Assembled molecule168,497,7021168,366,984168,497,702210
Chromosome 3Assembled molecule127,729,9841127,715,589127,729,984110
Chromosome 4Assembled molecule94,792,718194,665,50894,792,718110
Chromosome 5Assembled molecule83,911,885183,891,99783,911,88580
Chromosome 6Assembled molecule74,012,424174,003,99374,012,42490
Chromosome 7Assembled molecule57,337,692157,334,78957,337,69230
Chromosome 8Assembled molecule56,067,456156,062,82856,067,45690
Chromosome 9Assembled molecule49,584,886149,542,86349,584,88650
Chromosome 10Assembled molecule24,951,137124,951,13724,951,13700
Chromosome 11Assembled molecule23,746,389123,745,68923,746,38920
Chromosome 12Assembled molecule19,044,653119,043,19019,044,65330
Chromosome 13Assembled molecule17,527,968117,470,15817,527,96850
Chromosome 14Assembled molecule15,997,610115,997,21015,997,61020
Chromosome 15Assembled molecule15,976,837115,976,58715,976,83730
Chromosome 16Assembled molecule10,140,224110,134,34210,140,22470
Chromosome 17Assembled molecule10,055,36619,991,02810,055,36630
Chromosome 18Assembled molecule9,353,20919,337,8089,353,20930
Chromosome 19Assembled molecule8,543,35718,511,1978,543,35790
Chromosome 20Assembled molecule8,227,24518,203,7488,227,24580
Chromosome 21Assembled molecule7,619,52817,617,6287,619,52850
Chromosome 22Assembled molecule6,853,92316,800,2446,853,923100
Chromosome 23Assembled molecule4,305,88214,276,1934,305,882150
Chromosome 24AllAssembled moleculeUnlocalized scaffolds3,179,1272,410,758768,3692113,170,2852,405,416764,8692,410,7582,410,758768,3691587000
Chromosome 25Assembled molecule2,577,81012,573,6102,577,810120
Chromosome 26Assembled molecule2,403,52412,401,6242,403,52450
Chromosome 27Assembled molecule2,310,77112,305,1712,310,771160
Chromosome 28Assembled molecule386,4041384,304386,40460
Chromosome 29Assembled molecule383,8191381,919383,81950
Chromosome 30Assembled molecule213,7191212,519213,71930
Chromosome WAllAssembled moleculeUnlocalized scaffolds31,970,39231,882,72387,66921131,912,96231,825,29387,66931,882,72331,882,72387,66922220000
Chromosome ZAssembled molecule88,208,671188,199,22088,208,671120
unplacedAssembled molecule108,104,525682108,100,947311,393130