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Source database (GenBank or RefSeq) File type

idZeuCucr1.2

Organism name:

Zeugodacus cucurbitae (melon fly)

Isolate:

PBARC_wt_2022May

Sex:

male

BioSample:

SAMN31932898

BioProject:

PRJNA906626

Submitter:

United States Department of Agriculture

Date:

2023/02/09

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_028554725.2 (latest)

RefSeq assembly accession:

GCF_028554725.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAQFWH01

Assembly method:

HiFiASM v. 0.16.1-r375

Expected final version:

yes

Genome coverage:

148x

Sequencing technology:

PacBio Sequel

Linked assembly:

GCA_028554715.1 (alternate pseudohaplotype of diploid)

IDs: 16057261 [UID] 41207468 [GenBank] 41245508 [RefSeq]

See Genome Information for Zeugodacus cucurbitae

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_028554725.2	≠	GCF_028554725.1	idZeuCucr1.2	Chromosome	Latest GenBank, Latest RefSeq
GCA_028554725.1	n/a	n/a	idZeuCucr1.1	Chromosome	Replaced GenBank

Comment

In March 2023 1 sequence was suppressed because it was found to be a contaminant.

Global statistics

Total sequence length	439,259,567
Total ungapped length	439,259,267
Gaps between scaffolds	0
Number of scaffolds	56
Scaffold N50	75,513,634
Scaffold L50	3
Number of contigs	59
Contig N50	74,843,483
Contig L50	3
Total number of chromosomes and plasmids	8
Number of component sequences (WGS or clone)	56

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 2	CM053019.1	=	NC_071667.1	0
Chromosome 3	CM053020.1	=	NC_071668.1	0
Chromosome 4	CM053021.1	=	NC_071669.1	0
Chromosome 5	CM053022.1	=	NC_071670.1	0
Chromosome 6	CM053023.1	=	NC_071671.1	0
Chromosome X	CM053024.1	=	NC_071672.1	0
Chromosome Y	CM053025.1	=	NC_071673.1	0
unplaced	n/a	n/a	n/a	48

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	439,243,742	55	439,243,442	75,513,634	3
Chromosome 2	87,691,525	1	87,691,525	87,691,525	0
Chromosome 3	78,876,360	1	78,876,160	78,876,360	2
Chromosome 4	75,513,634	1	75,513,634	75,513,634	0
Chromosome 5	74,843,483	1	74,843,483	74,843,483	0
Chromosome 6	73,624,416	1	73,624,416	73,624,416	0
Chromosome X	34,171,393	1	34,171,293	34,171,393	1
Chromosome Y	10,201,577	1	10,201,577	10,201,577	0
unplaced	4,321,354	48	4,321,354	365,511	0

Assembly

Genome Assembly

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idZeuCucr1.2

See Genome Information for Zeugodacus cucurbitae

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear