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Source database (GenBank or RefSeq) File type

MPM_Emac_v1.0

Organism name:

Eublepharis macularius (Leopard gecko)

Isolate:

TG4126

BioSample:

SAMN31016422

BioProject:

PRJNA884264

Submitter:

Milwaukee Public Museum

Date:

2023/02/10

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_028583425.1 (latest)

RefSeq assembly accession:

GCF_028583425.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAOPLA01

Assembly method:

HiFiasm v. 0.16.1-r375

Expected final version:

Genome coverage:

30.0x

Sequencing technology:

PacBio Sequel

IDs: 15866731 [UID] 40727478 [GenBank] 41761968 [RefSeq]

See Genome Information for Eublepharis macularius

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_028583425.1	≠	GCF_028583425.1	MPM_Emac_v1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,237,397,408
Total ungapped length	2,237,391,308
Gaps between scaffolds	0
Number of scaffolds	76
Scaffold N50	145,573,841
Scaffold L50	6
Number of contigs	137
Contig N50	80,105,973
Contig L50	9
Total number of chromosomes and plasmids	20
Number of component sequences (WGS or clone)	76

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM053277.1	=	NC_072790.1	0
Chromosome 2	CM053278.1	=	NC_072791.1	0
Chromosome 3	CM053279.1	=	NC_072792.1	0
Chromosome 4	CM053280.1	=	NC_072793.1	0
Chromosome 5	CM053281.1	=	NC_072794.1	0
Chromosome 6	CM053282.1	=	NC_072795.1	0
Chromosome 7	CM053283.1	=	NC_072796.1	0
Chromosome 8	CM053284.1	=	NC_072797.1	0
Chromosome 9	CM053285.1	=	NC_072798.1	0
Chromosome 10	CM053286.1	=	NC_072799.1	0
Chromosome 11	CM053287.1	=	NC_072800.1	0
Chromosome 12	CM053288.1	=	NC_072801.1	0
Chromosome 13	CM053289.1	=	NC_072802.1	0
Chromosome 14	CM053290.1	=	NC_072803.1	0
Chromosome 15	CM053291.1	=	NC_072804.1	0
Chromosome 16	CM053292.1	=	NC_072805.1	0
Chromosome 17	CM053293.1	=	NC_072806.1	0
Chromosome 18	CM053294.1	=	NC_072807.1	0
Chromosome 19	CM053295.1	=	NC_072808.1	0
unplaced	n/a	n/a	n/a	56

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,237,379,946	75	2,237,373,846	145,573,841	61
Chromosome 1	255,159,772	1	255,157,072	255,159,772	27
Chromosome 2	235,967,456	1	235,966,756	235,967,456	7
Chromosome 3	189,624,839	1	189,624,439	189,624,839	4
Chromosome 4	188,483,467	1	188,482,767	188,483,467	7
Chromosome 5	175,518,112	1	175,517,912	175,518,112	2
Chromosome 6	145,573,841	1	145,573,841	145,573,841	0
Chromosome 7	144,691,619	1	144,691,419	144,691,619	2
Chromosome 8	143,831,152	1	143,831,152	143,831,152	0
Chromosome 9	108,627,703	1	108,627,603	108,627,703	1
Chromosome 10	97,015,429	1	97,015,329	97,015,429	1
Chromosome 11	95,931,924	1	95,931,924	95,931,924	0
Chromosome 12	81,085,323	1	81,085,023	81,085,323	3
Chromosome 13	74,588,296	1	74,588,196	74,588,296	1
Chromosome 14	72,683,480	1	72,683,480	72,683,480	0
Chromosome 15	59,511,070	1	59,510,770	59,511,070	3
Chromosome 16	49,698,820	1	49,698,720	49,698,820	1
Chromosome 17	46,508,227	1	46,508,227	46,508,227	0
Chromosome 18	41,081,036	1	41,081,036	41,081,036	0
Chromosome 19	26,771,560	1	26,771,360	26,771,560	2
unplaced	5,026,820	56	5,026,820	166,527	0

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MPM_Emac_v1.0

See Genome Information for Eublepharis macularius

Pathogen Detection Resources

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear