Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

Leri_hhj_1

Organism name:

Leucoraja erinacea (little skate)

Infraspecific name:

Ecotype: New England

BioSample:

SAMN23457310

BioProject:

PRJNA783899

Submitter:

Okinawa Institute of Science and Technology

Date:

2023/02/22

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_028641065.1 (latest)

RefSeq assembly accession:

GCF_028641065.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAMYXN01

Assembly method:

dbg2olc v. 20160205

Expected final version:

yes

Genome coverage:

150.0x

Sequencing technology:

Illumina; PacBio Sequel

IDs: 15960171 [UID] 40977128 [GenBank] 42101738 [RefSeq]

See Genome Information for Leucoraja erinacea

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_028641065.1	≠	GCF_028641065.1	Leri_hhj_1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,190,861,671
Total ungapped length	2,190,780,694
Gaps between scaffolds	0
Number of scaffolds	1,769
Scaffold N50	57,189,699
Scaffold L50	12
Number of contigs	2,600
Contig N50	5,310,386
Contig L50	108
Total number of chromosomes and plasmids	51
Number of component sequences (WGS or clone)	1,769

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM054007.1	=	NC_073377.1	0
Chromosome 2	CM054008.1	=	NC_073378.1	0
Chromosome 3	CM054009.1	=	NC_073379.1	0
Chromosome 4	CM054010.1	=	NC_073380.1	0
Chromosome 5	CM054011.1	=	NC_073381.1	0
Chromosome 6	CM054012.1	=	NC_073382.1	0
Chromosome 7	CM054013.1	=	NC_073383.1	0
Chromosome 8	CM054014.1	=	NC_073384.1	0
Chromosome 9	CM054015.1	=	NC_073385.1	0
Chromosome 10	CM054016.1	=	NC_073386.1	0
Chromosome 11	CM054017.1	=	NC_073387.1	0
Chromosome 12	CM054018.1	=	NC_073388.1	0
Chromosome 13	CM054019.1	=	NC_073389.1	0
Chromosome 14	CM054020.1	=	NC_073390.1	0
Chromosome 15	CM054021.1	=	NC_073391.1	0
Chromosome 16	CM054022.1	=	NC_073392.1	0
Chromosome 17	CM054023.1	=	NC_073393.1	0
Chromosome 18	CM054024.1	=	NC_073394.1	0
Chromosome 19	CM054025.1	=	NC_073395.1	0
Chromosome 20	CM054026.1	=	NC_073396.1	0
Chromosome 21	CM054027.1	=	NC_073397.1	0
Chromosome 22	CM054028.1	=	NC_073398.1	0
Chromosome 23	CM054029.1	=	NC_073399.1	0
Chromosome 24	CM054030.1	=	NC_073400.1	0
Chromosome 25	CM054031.1	=	NC_073401.1	0
Chromosome 26	CM054032.1	=	NC_073402.1	0
Chromosome 27	CM054033.1	=	NC_073403.1	0
Chromosome 28	CM054034.1	=	NC_073404.1	0
Chromosome 29	CM054035.1	=	NC_073405.1	0
Chromosome 30	CM054036.1	=	NC_073406.1	0
Chromosome 31	CM054037.1	=	NC_073407.1	0
Chromosome 32	CM054038.1	=	NC_073408.1	0
Chromosome 33	CM054039.1	=	NC_073409.1	0
Chromosome 34	CM054040.1	=	NC_073410.1	0
Chromosome 35	CM054041.1	=	NC_073411.1	0
Chromosome 36	CM054042.1	=	NC_073412.1	0
Chromosome 37	CM054043.1	=	NC_073413.1	0
Chromosome 38	CM054044.1	=	NC_073414.1	0
Chromosome 39	CM054045.1	=	NC_073415.1	0
Chromosome 40	CM054046.1	=	NC_073416.1	0
Chromosome 41	CM054047.1	=	NC_073417.1	0
Chromosome 42	CM054048.1	=	NC_073418.1	0
Chromosome 43	CM054049.1	=	NC_073419.1	0
Chromosome 44	CM054050.1	=	NC_073420.1	0
Chromosome 45	CM054051.1	=	NC_073421.1	0
Chromosome 46	CM054052.1	=	NC_073422.1	0
Chromosome 47	CM054053.1	=	NC_073423.1	0
Chromosome 48	CM054054.1	=	NC_073424.1	0
Chromosome 49	CM054055.1	=	NC_073425.1	0
Chromosome 50	CM054056.1	=	NC_073426.1	0
unplaced	n/a	n/a	n/a	1,718

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,190,844,947	1,768	2,190,763,970	57,189,699	831
Chromosome 1	170,109,691	1	170,102,015	170,109,691	82
Chromosome 2	139,679,016	1	139,671,441	139,679,016	78
Chromosome 3	113,524,483	1	113,520,983	113,524,483	35
Chromosome 4	109,568,256	1	109,563,831	109,568,256	45
Chromosome 5	100,531,206	1	100,527,081	100,531,206	45
Chromosome 6	87,982,229	1	87,979,404	87,982,229	29
Chromosome 7	78,668,814	1	78,666,711	78,668,814	24
Chromosome 8	75,805,852	1	75,802,052	75,805,852	38
Chromosome 9	70,835,176	1	70,833,076	70,835,176	21
Chromosome 10	61,862,667	1	61,859,798	61,862,667	29
Chromosome 11	60,429,722	1	60,427,022	60,429,722	27
Chromosome 12	57,189,699	1	57,187,899	57,189,699	18
Chromosome 13	56,099,808	1	56,098,208	56,099,808	16
Chromosome 14	55,766,668	1	55,765,218	55,766,668	16
Chromosome 15	46,023,256	1	46,021,856	46,023,256	14
Chromosome 16	45,805,776	1	45,805,051	45,805,776	8
Chromosome 17	43,774,129	1	43,773,129	43,774,129	10
Chromosome 18	41,908,833	1	41,907,533	41,908,833	13
Chromosome 19	41,584,660	1	41,583,660	41,584,660	10
Chromosome 20	39,284,920	1	39,283,495	39,284,920	15
Chromosome 21	38,390,410	1	38,388,610	38,390,410	18
Chromosome 22	37,360,731	1	37,358,931	37,360,731	18
Chromosome 23	35,584,021	1	35,582,621	35,584,021	14
Chromosome 24	33,952,483	1	33,951,333	33,952,483	13
Chromosome 25	33,294,918	1	33,293,618	33,294,918	13
Chromosome 26	32,980,643	1	32,979,543	32,980,643	11
Chromosome 27	32,786,237	1	32,784,537	32,786,237	17
Chromosome 28	32,491,074	1	32,490,374	32,491,074	7
Chromosome 29	31,094,262	1	31,093,062	31,094,262	12
Chromosome 30	28,221,721	1	28,220,821	28,221,721	9
Chromosome 31	28,182,869	1	28,182,369	28,182,869	5
Chromosome 32	26,912,430	1	26,912,030	26,912,430	4
Chromosome 33	23,972,858	1	23,972,558	23,972,858	3
Chromosome 34	19,860,700	1	19,859,700	19,860,700	10
Chromosome 35	15,576,883	1	15,575,183	15,576,883	17
Chromosome 36	15,342,221	1	15,340,921	15,342,221	13
Chromosome 37	13,149,398	1	13,147,669	13,149,398	18
Chromosome 38	12,364,586	1	12,362,986	12,364,586	16
Chromosome 39	12,333,785	1	12,333,085	12,333,785	7
Chromosome 40	8,084,570	1	8,084,170	8,084,570	4
Chromosome 41	2,392,175	1	2,391,875	2,392,175	3
Chromosome 42	2,276,123	1	2,275,823	2,276,123	3
Chromosome 43	1,904,811	1	1,904,711	1,904,811	1
Chromosome 44	1,716,413	1	1,716,413	1,716,413	0
Chromosome 45	1,497,180	1	1,497,080	1,497,180	1
Chromosome 46	1,473,414	1	1,473,214	1,473,414	2
Chromosome 47	1,403,686	1	1,403,586	1,403,686	1
Chromosome 48	1,391,238	1	1,391,138	1,391,238	1
Chromosome 49	1,367,107	1	1,366,807	1,367,107	3
Chromosome 50	1,237,314	1	1,237,114	1,237,314	2
unplaced	165,813,825	1,718	165,812,625	129,259	12

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

Leri_hhj_1

See Genome Information for Leucoraja erinacea

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear