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ASM2880727v1

Organism name:
Mameliella sp. AT18 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AT18
BioSample:
SAMN33270643
BioProject:
PRJNA935295
Submitter:
Shantou University
Date:
2023/02/22
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_028807275.1 (latest)
RefSeq assembly accession:
GCF_028807275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JARAMO01
Assembly method:
SPAdes v. v3.15.3
Expected final version:
yes
Genome coverage:
10x
Sequencing technology:
Illumina NextSeq

IDs: 15970541 [UID] 41005508 [GenBank] 41064678 [RefSeq]

See Genome Information for Mameliella sp. AT18

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/17/2023 09:13:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,719
CDSs (total)::5,679
Genes (coding)::5,602
CDSs (with protein)::5,602
Genes (RNA)::40
rRNAs::1 (23S)
partial rRNAs::1 (23S)
tRNAs::36
ncRNAs::3
Pseudo Genes (total)::77
CDSs (without protein)::77
Pseudo Genes (ambiguous residues)::0 of 77
Pseudo Genes (frameshifted)::27 of 77
Pseudo Genes (incomplete)::52 of 77
Pseudo Genes (internal stop)::24 of 77
Pseudo Genes (multiple problems)::17 of 77
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,670,833
Total ungapped length5,670,833
Number of contigs332
Contig N5029,460
Contig L5066
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)332

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,670,8333325,670,83329,46000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mameliella sp. AT18Mameliella sp. AT18

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900101505.1Mameliella albatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.2187.4294.28

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna