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NHGRI_mSymSyn1-v1.1-hic.freeze_pri

Organism name:
Symphalangus syndactylus (siamang)
Isolate:
Jambi
Sex:
male
BioSample:
SAMN30216103
BioProject:
PRJNA916729
Submitter:
National Human Genome Research Institute, National Institutes of Health
Date:
2023/02/28
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_028878055.1 (replaced)
RefSeq assembly accession:
GCF_028878055.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAQQLG01
Assembly method:
Verkko v. 1.1
Expected final version:
no
Genome coverage:
81.0x
Sequencing technology:
PacBio Sequel; Oxford Nanopore PromethION
Linked assembly:
GCA_028878085.1 (alternate pseudohaplotype of diploid)

IDs: 16017291 [UID] 41102968 [GenBank] 41563668 [RefSeq]

See Genome Information for Symphalangus syndactylus

Pathogen Detection Resources

There are 5 assemblies for this organism

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History (Show revision history)

Comment

The unspecified linkage evidence came from assembly graph analysis

Global statistics

Number of regions with alternate loci or patches2
Total sequence length3,182,923,232
Total ungapped length3,182,923,132
Gaps between scaffolds0
Number of scaffolds605
Scaffold N50142,586,120
Scaffold L5011
Number of contigs606
Contig N50141,752,677
Contig L5011
Total number of chromosomes and plasmids26
Number of component sequences (WGS or clone)606

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly

Regions

NameLocation
PARX:14637401-16743352
PARY:6930167-9037659
Assembly Unit: Primary Assembly (GCF_028878065.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM054509.1=NC_072423.10
Chromosome 2CM054510.1=NC_072424.10
Chromosome 3CM054511.1=NC_072425.10
Chromosome 4CM054512.1=NC_072426.10
Chromosome 5CM054513.1=NC_072427.10
Chromosome 6CM054514.1=NC_072428.10
Chromosome 7CM054515.1=NC_072429.10
Chromosome 8CM054516.1=NC_072430.10
Chromosome 9CM054517.1=NC_072431.10
Chromosome 10CM054518.1=NC_072432.10
Chromosome 11CM054519.1=NC_072433.10
Chromosome 12CM054520.1=NC_072434.10
Chromosome 13CM054521.1=NC_072435.10
Chromosome 14CM054522.1=NC_072436.10
Chromosome 15CM054523.1=NC_072437.10
Chromosome 16CM054524.1=NC_072438.10
Chromosome 17CM054525.1=NC_072439.10
Chromosome 18CM054526.1=NC_072440.10
Chromosome 19CM054527.1=NC_072441.10
Chromosome 20CM054528.1=NC_072442.10
Chromosome 21CM054529.1=NC_072443.10
Chromosome 22CM054530.1=NC_072444.10
Chromosome 23CM054531.1=NC_072445.10
Chromosome 24CM054532.1=NC_072446.10
Chromosome XCM054533.1=NC_072447.10
Chromosome YCM054534.1=NC_072448.10
unplacedn/an/an/a579

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All3,182,923,2326053,182,923,132142,586,12010
Chromosome 1166,271,1711166,271,171166,271,17100
Chromosome 2168,756,1491168,756,149168,756,14900
Chromosome 3160,054,5921160,054,592160,054,59200
Chromosome 4167,252,5441167,252,544167,252,54400
Chromosome 5164,790,2251164,790,225164,790,22500
Chromosome 6141,752,6771141,752,677141,752,67700
Chromosome 7149,893,2421149,893,242149,893,24200
Chromosome 8153,248,3891153,248,389153,248,38900
Chromosome 9147,771,7801147,771,680147,771,78010
Chromosome 10145,484,3491145,484,349145,484,34900
Chromosome 11142,586,1201142,586,120142,586,12000
Chromosome 1294,093,695194,093,69594,093,69500
Chromosome 13133,841,3791133,841,379133,841,37900
Chromosome 14124,951,8311124,951,831124,951,83100
Chromosome 15121,467,0361121,467,036121,467,03600
Chromosome 16111,297,3371111,297,337111,297,33700
Chromosome 1791,610,234191,610,23491,610,23400
Chromosome 18105,794,4891105,794,489105,794,48900
Chromosome 1933,996,664133,996,66433,996,66400
Chromosome 2081,272,608181,272,60881,272,60800
Chromosome 2194,883,439194,883,43994,883,43900
Chromosome 2280,750,793180,750,79380,750,79300
Chromosome 2371,145,143171,145,14371,145,14300
Chromosome 2475,551,869175,551,86975,551,86900
Chromosome X165,588,5431165,588,543165,588,54300
Chromosome Y29,919,963129,919,96329,919,96300
unplaced58,896,97157958,896,9711,291,24400
Region
Name		LocationScaffold
Count		Total
Length		Ungapped
Length		Scaffold
N50		Spanned
Gaps