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Source database (GenBank or RefSeq) File type

NWPU_hadal_v1

Organism name:

Pseudoliparis swirei (bony fishes)

Infraspecific name:

Ecotype: Mariana Trench

Isolate:

HS2019

BioSample:

SAMN29358067

BioProject:

PRJNA852951

Submitter:

Northwestern Polytechnical University

Date:

2023/03/16

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_029220125.1 (latest)

RefSeq assembly accession:

GCF_029220125.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JANBZZ01

Assembly method:

wtdbg v. 2.4.1

Expected final version:

yes

Genome coverage:

76.4x

Sequencing technology:

Oxford Nanopore GridION

IDs: 16187221 [UID] 41495118 [GenBank] 42844288 [RefSeq]

See Genome Information for Pseudoliparis swirei

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_029220125.1	≠	GCF_029220125.1	NWPU_hadal_v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	626,455,521
Total ungapped length	625,580,831
Gaps between scaffolds	0
Number of scaffolds	200
Scaffold N50	25,738,204
Scaffold L50	11
Number of contigs	1,103
Contig N50	4,219,354
Contig L50	44
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	200

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM055212.1	=	NC_079388.1	0
Chromosome 2	CM055213.1	=	NC_079389.1	0
Chromosome 3	CM055214.1	=	NC_079390.1	0
Chromosome 4	CM055215.1	=	NC_079391.1	0
Chromosome 5	CM055216.1	=	NC_079392.1	0
Chromosome 6	CM055217.1	=	NC_079393.1	0
Chromosome 7	CM055218.1	=	NC_079394.1	0
Chromosome 8	CM055219.1	=	NC_079395.1	0
Chromosome 9	CM055220.1	=	NC_079396.1	0
Chromosome 10	CM055221.1	=	NC_079397.1	0
Chromosome 11	CM055222.1	=	NC_079398.1	0
Chromosome 12	CM055223.1	=	NC_079399.1	0
Chromosome 13	CM055224.1	=	NC_079400.1	0
Chromosome 14	CM055225.1	=	NC_079401.1	0
Chromosome 15	CM055226.1	=	NC_079402.1	0
Chromosome 16	CM055227.1	=	NC_079403.1	0
Chromosome 17	CM055228.1	=	NC_079404.1	0
Chromosome 18	CM055229.1	=	NC_079405.1	0
Chromosome 19	CM055230.1	=	NC_079406.1	0
Chromosome 20	CM055231.1	=	NC_079407.1	0
Chromosome 21	CM055232.1	=	NC_079408.1	0
Chromosome 22	CM055233.1	=	NC_079409.1	0
Chromosome 23	CM055234.1	=	NC_079410.1	0
Chromosome 24	CM055235.1	=	NC_079411.1	0
unplaced	n/a	n/a	n/a	175

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	626,438,928	199	625,564,238	25,738,204	903
Chromosome 1	22,758,170	1	22,738,677	22,758,170	20
Chromosome 2	25,738,204	1	25,722,207	25,738,204	18
Chromosome 3	25,704,110	1	25,686,113	25,704,110	19
Chromosome 4	35,158,290	1	35,122,301	35,158,290	36
Chromosome 5	28,336,553	1	28,304,556	28,336,553	32
Chromosome 6	30,299,713	1	30,258,720	30,299,713	42
Chromosome 7	31,841,004	1	31,763,029	31,841,004	79
Chromosome 8	24,444,515	1	24,393,526	24,444,515	51
Chromosome 9	29,284,089	1	29,243,096	29,284,089	41
Chromosome 10	18,893,833	1	18,860,340	18,893,833	34
Chromosome 11	25,482,508	1	25,445,418	25,482,508	39
Chromosome 12	23,897,448	1	23,863,955	23,897,448	36
Chromosome 13	22,226,877	1	22,205,378	22,226,877	22
Chromosome 14	11,976,362	1	11,956,864	11,976,362	20
Chromosome 15	23,411,436	1	23,388,440	23,411,436	23
Chromosome 16	25,961,070	1	25,940,577	25,961,070	21
Chromosome 17	24,184,323	1	24,160,834	24,184,323	24
Chromosome 18	29,445,365	1	29,416,875	29,445,365	29
Chromosome 19	28,445,958	1	28,427,463	28,445,958	19
Chromosome 20	29,111,325	1	29,077,837	29,111,325	33
Chromosome 21	19,604,762	1	19,565,764	19,604,762	39
Chromosome 22	23,999,044	1	23,983,048	23,999,044	16
Chromosome 23	24,710,793	1	24,683,297	24,710,793	29
Chromosome 24	30,473,484	1	30,430,995	30,473,484	45
unplaced	11,049,692	175	10,924,928	1,273,718	136

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NWPU_hadal_v1

See Genome Information for Pseudoliparis swirei

Pathogen Detection Resources

History (Show revision history)

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Assembly Unit Name
Primary Assembly
non-nuclear