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NHGRI_mGorGor1-v1.1-0.2.freeze_pri

Organism name:
Gorilla gorilla gorilla (western lowland gorilla)
Isolate:
KB3781
Sex:
male
BioSample:
SAMN04003007
BioProject:
PRJNA942267
Submitter:
National Human Genome Research Institute, National Institutes of Health
Date:
2023/03/20
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_029281585.1 (replaced)
RefSeq assembly accession:
GCF_029281585.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JARGGP01
Assembly method:
Verkko v. 1.1
Expected final version:
no
Genome coverage:
76.0x
Sequencing technology:
PacBio Sequel; Oxford Nanopore PromethION

IDs: 16220871 [UID] 41558858 [GenBank] 41963888 [RefSeq]

See Genome Information for Gorilla gorilla

Pathogen Detection Resources

There are 12 assemblies for this organism

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History (Show revision history)

Comment

This is the goldenpath principal haplotype containing all chromosomes. The maternal (JAQQLJ000000000) and paternal (JAQQLK000000000) haplotypes are also available.

Global statistics

Number of regions with alternate loci or patches2
Total sequence length3,600,562,452
Total ungapped length3,595,314,213
Gaps between scaffolds0
Number of scaffolds637
Scaffold N50151,559,850
Scaffold L5010
Number of contigs675
Contig N50118,427,599
Contig L5012
Total number of chromosomes and plasmids25
Number of component sequences (WGS or clone)637

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly

Regions

NameLocation
PARX:9553142-12048775
PARY:6884508-9395068
Assembly Unit: Primary Assembly (GCF_029281615.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM055446.1=NC_073224.10
Chromosome 2ACM055447.1=NC_073225.10
Chromosome 2BCM055448.1=NC_073226.10
Chromosome 3CM055449.1=NC_073227.10
Chromosome 4CM055450.1=NC_073228.10
Chromosome 5CM055451.1=NC_073229.10
Chromosome 6CM055452.1=NC_073230.10
Chromosome 7CM055453.1=NC_073231.10
Chromosome 8CM055454.1=NC_073232.10
Chromosome 9CM055455.1=NC_073233.10
Chromosome 10CM055456.1=NC_073234.10
Chromosome 11CM055457.1=NC_073235.10
Chromosome 12CM055458.1=NC_073236.10
Chromosome 13CM055459.1=NC_073237.10
Chromosome 14CM055460.1=NC_073238.10
Chromosome 15CM055461.1=NC_073239.10
Chromosome 16CM055462.1=NC_073240.10
Chromosome 17CM055463.1=NC_073241.10
Chromosome 18CM055464.1=NC_073242.10
Chromosome 19CM055465.1=NC_073243.10
Chromosome 20CM055466.1=NC_073244.10
Chromosome 21CM055467.1=NC_073245.10
Chromosome 22CM055468.1=NC_073246.10
Chromosome XCM055469.1=NC_073247.10
Chromosome YCM055470.1=NC_073248.10
unplacedn/an/an/a612

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All3,600,562,4526373,595,314,213151,559,850380
Chromosome 1249,563,9741249,539,237249,563,97410
Chromosome 2A143,591,5641143,462,797143,591,56410
Chromosome 2B133,791,3131133,791,313133,791,31300
Chromosome 3215,050,7481215,050,748215,050,74800
Chromosome 4207,808,1031207,808,003207,808,10310
Chromosome 5193,755,0951193,755,095193,755,09500
Chromosome 6199,254,5711198,483,604199,254,57120
Chromosome 7170,822,2151170,821,215170,822,21510
Chromosome 8165,044,5121164,540,650165,044,51220
Chromosome 9135,548,0691135,249,240135,548,06930
Chromosome 10151,559,8501151,559,850151,559,85000
Chromosome 11148,876,9511148,876,951148,876,95100
Chromosome 12153,954,4381153,949,438153,954,43810
Chromosome 13118,427,5991118,427,599118,427,59900
Chromosome 14122,391,6981122,381,643122,391,69820
Chromosome 1593,299,756193,299,65693,299,75610
Chromosome 16119,518,5701116,851,175119,518,570150
Chromosome 17112,686,1991112,686,199112,686,19900
Chromosome 18108,499,8201108,386,558108,499,82020
Chromosome 1980,303,867180,303,86780,303,86700
Chromosome 2084,473,277184,473,27784,473,27700
Chromosome 2151,778,349151,778,34951,778,34900
Chromosome 2251,186,860150,845,85951,186,86020
Chromosome X177,553,1371177,553,137177,553,13700
Chromosome Y65,269,191165,269,19165,269,19100
unplaced146,552,726612146,169,5621,755,69840
Region
Name		LocationScaffold
Count		Total
Length		Ungapped
Length		Scaffold
N50		Spanned
Gaps