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Source database (GenBank or RefSeq) File type

PCC_UOA_SB_1v2

Organism name:

Bubalus kerabau (carabao)

Infraspecific name:

Breed: swamp buffalo

Infraspecific name:

Ecotype: Philippines

Isolate:

K-KA32

Sex:

female

BioSample:

SAMN31703457

BioProject:

PRJNA901059

Submitter:

University of Adelaide

Date:

2023/03/31

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_029407905.2 (latest)

RefSeq assembly accession:

GCF_029407905.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JARFXY01

Assembly method:

HiFiasm v. 0.16.1-r375

Expected final version:

yes

Genome coverage:

34.0x

Sequencing technology:

PacBio Sequel II

IDs: 16436731 [UID] 42145098 [GenBank] 42254978 [RefSeq]

See Genome Information for Bubalus kerabau

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_029407905.2	≠	GCF_029407905.1	PCC_UOA_SB_1v2	Chromosome	Latest GenBank, Latest RefSeq
GCA_029407905.1	n/a	n/a	PCC_UOA_SB_1	Chromosome	Replaced GenBank

Comment

In April 2023 55 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length	2,898,492,518
Total ungapped length	2,898,488,318
Gaps between scaffolds	0
Number of scaffolds	115
Scaffold N50	121,846,921
Scaffold L50	9
Number of contigs	136
Contig N50	91,172,394
Contig L50	12
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	115

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM055790.1	=	NC_073624.1	0
Chromosome 2	CM055791.1	=	NC_073625.1	0
Chromosome 3	CM055792.1	=	NC_073626.1	0
Chromosome 4	CM055793.1	=	NC_073627.1	0
Chromosome 5	CM055794.1	=	NC_073628.1	0
Chromosome 6	CM055795.1	=	NC_073629.1	0
Chromosome 7	CM055796.1	=	NC_073630.1	0
Chromosome 8	CM055797.1	=	NC_073631.1	0
Chromosome 9	CM055798.1	=	NC_073632.1	0
Chromosome 10	CM055799.1	=	NC_073633.1	0
Chromosome 11	CM055800.1	=	NC_073634.1	0
Chromosome 12	CM055801.1	=	NC_073635.1	0
Chromosome 13	CM055802.1	=	NC_073636.1	0
Chromosome 14	CM055803.1	=	NC_073637.1	0
Chromosome 15	CM055804.1	=	NC_073638.1	0
Chromosome 16	CM055805.1	=	NC_073639.1	0
Chromosome 17	CM055806.1	=	NC_073640.1	0
Chromosome 18	CM055807.1	=	NC_073641.1	0
Chromosome 19	CM055808.1	=	NC_073642.1	0
Chromosome 20	CM055809.1	=	NC_073643.1	0
Chromosome 21	CM055810.1	=	NC_073644.1	0
Chromosome 22	CM055811.1	=	NC_073645.1	0
Chromosome 23	CM055812.1	=	NC_073646.1	0
Chromosome X	CM055813.1	=	NC_073647.1	0
unplaced	n/a	n/a	n/a	91

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,898,492,518	115	2,898,488,318	121,846,921	21
Chromosome 1	280,268,733	1	280,268,133	280,268,733	3
Chromosome 2	203,873,284	1	203,873,084	203,873,284	1
Chromosome 3	190,050,606	1	190,050,406	190,050,606	1
Chromosome 4	182,813,652	1	182,812,652	182,813,652	5
Chromosome 5	135,990,451	1	135,990,451	135,990,451	0
Chromosome 6	121,846,921	1	121,846,521	121,846,921	2
Chromosome 7	121,889,674	1	121,889,674	121,889,674	0
Chromosome 8	123,314,732	1	123,314,732	123,314,732	0
Chromosome 9	112,355,845	1	112,355,645	112,355,845	1
Chromosome 10	108,390,249	1	108,390,249	108,390,249	0
Chromosome 11	109,796,162	1	109,796,162	109,796,162	0
Chromosome 12	91,172,394	1	91,172,394	91,172,394	0
Chromosome 13	84,270,603	1	84,270,603	84,270,603	0
Chromosome 14	84,646,488	1	84,646,488	84,646,488	0
Chromosome 15	85,467,828	1	85,467,828	85,467,828	0
Chromosome 16	77,343,108	1	77,343,108	77,343,108	0
Chromosome 17	70,902,912	1	70,902,712	70,902,912	1
Chromosome 18	73,943,557	1	73,943,557	73,943,557	0
Chromosome 19	70,962,441	1	70,962,441	70,962,441	0
Chromosome 20	62,850,967	1	62,850,967	62,850,967	0
Chromosome 21	65,354,041	1	65,354,041	65,354,041	0
Chromosome 22	54,521,221	1	54,521,221	54,521,221	0
Chromosome 23	43,817,392	1	43,817,192	43,817,392	1
Chromosome X	165,470,528	1	165,469,528	165,470,528	5
unplaced	177,178,729	91	177,178,529	3,235,878	1

Assembly

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PCC_UOA_SB_1v2

See Genome Information for Bubalus kerabau

Pathogen Detection Resources

History (Show revision history)

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