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Source database (GenBank or RefSeq) File type

ASM2944872v1

Organism name:

Salvelinus fontinalis (brook trout)

Isolate:

EN_2023a

Sex:

female

BioSample:

SAMN32676627

BioProject:

PRJNA922922

Submitter:

Laval University

Date:

2023/03/28

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_029448725.1 (latest)

RefSeq assembly accession:

GCF_029448725.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAQYZX01

Assembly method:

flye v. 2.8.1-b1676

Expected final version:

yes

Genome coverage:

120.0x

Sequencing technology:

PacBio Sequel

IDs: 16291551 [UID] 41749788 [GenBank] 42333128 [RefSeq]

See Genome Information for Salvelinus fontinalis

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_029448725.1	≠	GCF_029448725.1	ASM2944872v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,496,185,110
Total ungapped length	2,491,876,543
Gaps between scaffolds	0
Number of scaffolds	2,721
Scaffold N50	50,983,633
Scaffold L50	19
Number of contigs	6,739
Contig N50	1,231,776
Contig L50	490
Total number of chromosomes and plasmids	42
Number of component sequences (WGS or clone)	2,721

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM055683.1	=	NC_074665.1	0
Chromosome 2	CM055684.1	=	NC_074666.1	0
Chromosome 3	CM055685.1	=	NC_074667.1	0
Chromosome 4	CM055686.1	=	NC_074668.1	0
Chromosome 5	CM055687.1	=	NC_074669.1	0
Chromosome 6	CM055688.1	=	NC_074670.1	0
Chromosome 7	CM055689.1	=	NC_074671.1	0
Chromosome 8	CM055690.1	=	NC_074672.1	0
Chromosome 9	CM055691.1	=	NC_074673.1	0
Chromosome 10	CM055692.1	=	NC_074674.1	0
Chromosome 11	CM055693.1	=	NC_074675.1	0
Chromosome 12	CM055694.1	=	NC_074676.1	0
Chromosome 13	CM055695.1	=	NC_074677.1	0
Chromosome 14	CM055696.1	=	NC_074678.1	0
Chromosome 15	CM055697.1	=	NC_074679.1	0
Chromosome 16	CM055698.1	=	NC_074680.1	0
Chromosome 17	CM055699.1	=	NC_074681.1	0
Chromosome 18	CM055700.1	=	NC_074682.1	0
Chromosome 19	CM055701.1	=	NC_074683.1	0
Chromosome 20	CM055702.1	=	NC_074684.1	0
Chromosome 21	CM055703.1	=	NC_074685.1	0
Chromosome 22	CM055704.1	=	NC_074686.1	0
Chromosome 23	CM055705.1	=	NC_074687.1	0
Chromosome 24	CM055706.1	=	NC_074688.1	0
Chromosome 25	CM055707.1	=	NC_074689.1	0
Chromosome 26	CM055708.1	=	NC_074690.1	0
Chromosome 27	CM055709.1	=	NC_074691.1	0
Chromosome 28	CM055710.1	=	NC_074692.1	0
Chromosome 29	CM055711.1	=	NC_074693.1	0
Chromosome 30	CM055712.1	=	NC_074694.1	0
Chromosome 31	CM055713.1	=	NC_074695.1	0
Chromosome 32	CM055714.1	=	NC_074696.1	0
Chromosome 33	CM055715.1	=	NC_074697.1	0
Chromosome 34	CM055716.1	=	NC_074698.1	0
Chromosome 35	CM055717.1	=	NC_074699.1	0
Chromosome 36	CM055718.1	=	NC_074700.1	0
Chromosome 37	CM055719.1	=	NC_074701.1	0
Chromosome 38	CM055720.1	=	NC_074702.1	0
Chromosome 39	CM055721.1	=	NC_074703.1	0
Chromosome 40	CM055722.1	=	NC_074704.1	0
Chromosome 41	CM055723.1	=	NC_074705.1	0
Chromosome 42	CM055724.1	=	NC_074706.1	0
unplaced	n/a	n/a	n/a	2,679

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,496,185,110	2,721	2,491,876,543	50,983,633	4,018
Chromosome 1	101,316,066	1	101,166,381	101,316,066	143
Chromosome 2	101,148,069	1	100,988,967	101,148,069	153
Chromosome 3	78,939,564	1	78,830,972	78,939,564	119
Chromosome 4	88,210,620	1	88,019,122	88,210,620	163
Chromosome 5	67,316,613	1	67,168,351	67,316,613	157
Chromosome 6	86,004,203	1	85,842,559	86,004,203	150
Chromosome 7	69,297,716	1	69,165,185	69,297,716	125
Chromosome 8	52,002,740	1	51,902,275	52,002,740	74
Chromosome 9	61,936,799	1	61,857,602	61,936,799	61
Chromosome 10	50,268,153	1	50,198,914	50,268,153	63
Chromosome 11	60,085,304	1	59,936,794	60,085,304	152
Chromosome 12	60,416,927	1	60,369,632	60,416,927	51
Chromosome 13	55,592,301	1	55,546,439	55,592,301	42
Chromosome 14	56,307,559	1	56,236,768	56,307,559	59
Chromosome 15	47,696,033	1	47,623,509	47,696,033	54
Chromosome 16	53,561,650	1	53,461,084	53,561,650	75
Chromosome 17	48,822,140	1	48,770,494	48,822,140	47
Chromosome 18	62,731,796	1	62,665,210	62,731,796	57
Chromosome 19	56,108,426	1	56,050,959	56,108,426	58
Chromosome 20	46,220,702	1	46,158,983	46,220,702	62
Chromosome 21	52,113,258	1	52,055,878	52,113,258	57
Chromosome 22	42,625,803	1	42,564,211	42,625,803	62
Chromosome 23	50,983,633	1	50,919,826	50,983,633	56
Chromosome 24	46,851,096	1	46,754,719	46,851,096	62
Chromosome 25	43,302,116	1	43,238,036	43,302,116	55
Chromosome 26	48,152,825	1	48,115,836	48,152,825	36
Chromosome 27	45,259,495	1	45,172,985	45,259,495	70
Chromosome 28	50,913,443	1	50,854,021	50,913,443	70
Chromosome 29	46,201,713	1	46,144,098	46,201,713	58
Chromosome 30	42,718,502	1	42,640,318	42,718,502	60
Chromosome 31	49,840,808	1	49,766,803	49,840,808	66
Chromosome 32	45,901,657	1	45,802,019	45,901,657	80
Chromosome 33	51,265,593	1	51,179,189	51,265,593	90
Chromosome 34	39,882,818	1	39,715,659	39,882,818	124
Chromosome 35	43,061,335	1	42,933,840	43,061,335	137
Chromosome 36	34,452,196	1	34,390,444	34,452,196	66
Chromosome 37	34,569,483	1	34,537,722	34,569,483	38
Chromosome 38	36,714,413	1	36,612,650	36,714,413	99
Chromosome 39	28,793,718	1	28,709,622	28,793,718	106
Chromosome 40	30,609,635	1	30,503,154	30,609,635	106
Chromosome 41	24,386,083	1	24,339,219	24,386,083	58
Chromosome 42	26,002,104	1	25,946,262	26,002,104	60
unplaced	277,600,002	2,679	277,019,832	224,935	537

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ASM2944872v1

See Genome Information for Salvelinus fontinalis

Pathogen Detection Resources

History (Show revision history)

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