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aHylSar1.hap1

Organism name:
Hyla sarda (Sardinian treefrog)
Isolate:
aHylSar1
Sex:
female
BioSample:
SAMN32629340
BioProject:
PRJNA921707
Submitter:
Vertebrate Genomes Project
Date:
2023/04/07
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_029499605.1 (latest)
RefSeq assembly accession:
GCF_029499605.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JARJIZ01
Assembly method:
Hifiasm + Hi-C phasing v. 0.16.1 + galaxy2; Bionano Solve v. 3.7.0 + galaxy0; yahs v. 1.2a + galaxy1
Expected final version:
no
Genome coverage:
30.0x
Sequencing technology:
PacBio Sequel II HiFi

IDs: 16370951 [UID] 41978218 [GenBank] 42745998 [RefSeq]

See Genome Information for Hyla sarda

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length4,142,159,359
Total ungapped length4,141,700,132
Gaps between scaffolds0
Number of scaffolds3,474
Scaffold N50384,967,061
Scaffold L505
Number of contigs5,771
Contig N503,809,262
Contig L50271
Total number of chromosomes and plasmids13
Number of component sequences (WGS or clone)3,474

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_029501675.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM056035.1=NC_079189.126
Chromosome 2CM056036.1=NC_079190.121
Chromosome 3CM056037.1=NC_079191.10
Chromosome 4CM056038.1=NC_079192.10
Chromosome 5CM056039.1=NC_079193.10
Chromosome 6CM056040.1=NC_079194.10
Chromosome 7CM056041.1=NC_079195.11
Chromosome 8CM056042.1=NC_079196.10
Chromosome 9CM056043.1=NC_079197.10
Chromosome 10CM056044.1=NC_079198.11
Chromosome 11CM056045.1=NC_079199.10
Chromosome 12CM056046.1=NC_079200.10
Chromosome 13CM056047.1=NC_079201.10
unplacedn/an/an/a3,412

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule4,142,159,3593,4744,141,700,132384,967,0612,2970
Chromosome 1AllAssembled moleculeUnlocalized scaffolds638,718,906620,771,67017,947,23627126638,658,906620,713,07017,945,836620,771,670620,771,670791,2223002937000
Chromosome 2AllAssembled moleculeUnlocalized scaffolds526,866,934515,579,75511,287,17922121526,811,734515,524,75511,286,979515,579,755515,579,755540,9232762751000
Chromosome 3Assembled molecule449,363,9541449,326,354449,363,9541880
Chromosome 4Assembled molecule420,026,7311419,991,331420,026,7311770
Chromosome 5Assembled molecule384,967,0611384,926,661384,967,0612020
Chromosome 6Assembled molecule305,781,9081305,748,908305,781,9081650
Chromosome 7AllAssembled moleculeUnlocalized scaffolds236,521,203235,928,425592,778211236,489,403235,896,625592,778235,928,425235,928,425592,7781591590000
Chromosome 8Assembled molecule234,648,2161234,611,816234,648,2161820
Chromosome 9Assembled molecule192,262,0071192,231,407192,262,0071530
Chromosome 10AllAssembled moleculeUnlocalized scaffolds146,072,701145,440,957631,744211146,051,501145,419,757631,744145,440,957145,440,957631,7441061060000
Chromosome 11Assembled molecule107,185,8181107,167,218107,185,818930
Chromosome 12Assembled molecule85,732,621185,719,22185,732,621670
Chromosome 13Assembled molecule50,269,043150,259,24350,269,043490
unplacedAssembled molecule363,742,2563,412363,706,429178,7891800