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SorFum_2.1

Organism name:
Sorex fumeus (smoky shrew)
Isolate:
SC7_HLTpool
Sex:
female
BioSample:
SAMN33271612
BioProject:
PRJNA826195
Submitter:
Trent University
Date:
2023/04/17
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_029834395.2 (latest)
RefSeq assembly accession:
GCF_029834395.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JARJLC01
Assembly method:
Hifiasm v. 0.16.1-r375
Expected final version:
yes
Genome coverage:
43.0x
Sequencing technology:
PacBio Sequel; Illumina HiSeq

IDs: 16555591 [UID] 42590128 [GenBank] 42668588 [RefSeq]

See Genome Information for Sorex fumeus

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

In May 2023 1 sequence was suppressed because it was found to be a contaminant.

Global statistics

Total sequence length2,873,555,620
Total ungapped length2,873,555,620
Number of contigs497
Contig N5042,400,022
Contig L5023
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)497

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,873,555,6204972,873,555,62042,400,02200