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ASM3013550v1

Organism name:
Pseudoalteromonas sp. P94(2023) (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: P94
BioSample:
SAMN35168331
BioProject:
PRJNA974159
Submitter:
Southern Oregon University
Date:
2023/05/30
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_030135505.1 (latest)
RefSeq assembly accession:
GCF_030135505.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JASJUT01
Assembly method:
SPAdes v. 3.15.0
Expected final version:
yes
Genome coverage:
38.3x
Sequencing technology:
Illumina NextSeq

IDs: 16701191 [UID] 42955098 [GenBank] 43013328 [RefSeq]

See Genome Information for Pseudoalteromonas sp. P94(2023)

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from BCCM/LMG Bacteria Collection; DSMZ Bacteria Collection

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/23/2023 11:35:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,433
CDSs (total)::5,313
Genes (coding)::5,287
CDSs (with protein)::5,287
Genes (RNA)::120
rRNAs::3, 3, 1 (5S, 16S, 23S)
complete rRNAs::3 (5S)
partial rRNAs::3, 1 (16S, 23S)
tRNAs::109
ncRNAs::4
Pseudo Genes (total)::26
CDSs (without protein)::26
Pseudo Genes (ambiguous residues)::0 of 26
Pseudo Genes (frameshifted)::9 of 26
Pseudo Genes (incomplete)::15 of 26
Pseudo Genes (internal stop)::7 of 26
Pseudo Genes (multiple problems)::5 of 26
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,295,190
Total ungapped length6,294,032
Gaps between scaffolds0
Number of scaffolds30
Scaffold N50335,200
Scaffold L505
Number of contigs42
Contig N50286,624
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)30

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,295,190306,294,032335,200120

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudoalteromonas sp. P94(2023)Pseudoalteromonas sp. P94(2023)

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014925325.1Pseudoalteromonas luteoviolaceasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.2431.0732.25

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna