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ASM3090840v1

Organism name:
Aminobacterium sp. MB27-C1 (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MB27-C1
BioSample:
SAMN37010248
BioProject:
PRJNA1006156
Submitter:
Sanming University
Date:
2023/08/27
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_030908405.1 (latest)
RefSeq assembly accession:
GCF_030908405.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. 2.2
Expected final version:
yes
Genome coverage:
1018.0x
Sequencing technology:
Oxford Nanopore MinION; DNBSEQ-T7

IDs: 18263931 [UID] 46652408 [GenBank] 46805058 [RefSeq]

See Genome Information for Aminobacterium sp. MB27-C1

History (Show revision history)

Comment

Bacteria and source DNA available from Sanming University, Sanming City, Fujian, China; PI: Sheng-Chung Chen
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::08/27/2023 19:32:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,340
CDSs (total)::2,280
Genes (coding)::2,272
CDSs (with protein)::2,272
Genes (RNA)::60
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::48
ncRNAs::3
Pseudo Genes (total)::8
CDSs (without protein)::8
Pseudo Genes (ambiguous residues)::0 of 8
Pseudo Genes (frameshifted)::3 of 8
Pseudo Genes (incomplete)::4 of 8
Pseudo Genes (internal stop)::1 of 8
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,427,830
Total ungapped length2,427,830
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_030908415.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP133089.1=NZ_CP133089.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,427,830

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aminobacterium sp. MB27-C1Aminobacterium sp. MB27-C1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000025885.1Aminobacterium colombiensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type78.5612.6215.47

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna