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ASM3380753v1

Organism name:
Oceanisphaera sp. IT1-181 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: IT1-181
BioSample:
SAMN37822635
BioProject:
PRJNA1028355
Submitter:
Polar Research Institute of China
Date:
2023/11/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_033807535.1 (latest)
RefSeq assembly accession:
GCF_033807535.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SPAdes v. 3.11.0
Expected final version:
yes
Genome coverage:
657.0x
Sequencing technology:
Illumina HiSeq; PacBio RSII

IDs: 19807541 [UID] 50267098 [GenBank] 50381478 [RefSeq]

See Genome Information for Oceanisphaera sp. IT1-181

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Polar Research Institute of China

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/22/2023 16:09:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,300
CDSs (total)::3,182
Genes (coding)::3,133
CDSs (with protein)::3,133
Genes (RNA)::118
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::89
ncRNAs::4
Pseudo Genes (total)::49
CDSs (without protein)::49
Pseudo Genes (ambiguous residues)::0 of 49
Pseudo Genes (frameshifted)::22 of 49
Pseudo Genes (incomplete)::37 of 49
Pseudo Genes (internal stop)::18 of 49
Pseudo Genes (multiple problems)::19 of 49
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,699,250
Total ungapped length3,699,250
Total number of chromosomes and plasmids6

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_033807545.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP136856.1=NZ_CP136856.1
Plasmid pACP136857.1=NZ_CP136857.1
Plasmid pBCP136858.1=NZ_CP136858.1
Plasmid pCCP136859.1=NZ_CP136859.1
Plasmid pDCP136860.1=NZ_CP136860.1
Plasmid pECP136861.1=NZ_CP136861.1

Assembly statistics

MoleculeTotal
Length
All3,699,250
Chromosome 3,572,184
Plasmid pA114,362
Plasmid pB4,149
Plasmid pC4,072
Plasmid pD2,477
Plasmid pE2,006

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Oceanisphaera sp. IT1-181Oceanisphaera sp. IT1-181

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002157895.1Oceanisphaera profundatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.0575.5479.64

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna