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ASM3580027v1

Organism name:
Bacillus cereus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: HD-214
BioSample:
SAMN33769676
BioProject:
PRJNA802201
Submitter:
USDA-ARS-NCAUR
Date:
2024/01/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • from large multi-isolate project
GenBank assembly accession:
GCA_035800275.1 (latest)
RefSeq assembly accession:
GCF_035800275.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JARKZH01
Assembly method:
CLC NGS Cell v. 21
Expected final version:
yes
Genome coverage:
243x
Sequencing technology:
Illumina NovaSeq

IDs: 20936071 [UID] 52719528 [GenBank] 52819558 [RefSeq]

See Genome Information for Bacillus cereus

There are 2530 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::03/20/2023 16:23:50
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Annotation Software revision::6.4
Genes (total)::6,431
CDSs (total)::6,332
Genes (coding)::6,054
CDSs (with protein)::6,054
Genes (RNA)::99
rRNAs::5, 1, 1 (5S, 16S, 23S)
complete rRNAs::5, 1, 1 (5S, 16S, 23S)
tRNAs::87
ncRNAs::5
Pseudo Genes (total)::278
CDSs (without protein)::278
Pseudo Genes (ambiguous residues)::1 of 278
Pseudo Genes (frameshifted)::97 of 278
Pseudo Genes (incomplete)::191 of 278
Pseudo Genes (internal stop)::71 of 278
Pseudo Genes (multiple problems)::70 of 278
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,026,432
Total ungapped length6,025,993
Gaps between scaffolds0
Number of scaffolds255
Scaffold N5055,009
Scaffold L5032
Number of contigs267
Contig N5054,735
Contig L5032
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)255

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,026,4322556,025,99355,009120

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus cereusBacillus cereus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900445355.1Bacillus cereustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900445355.1Bacillus cereustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.1177.3686.08
Best-match type97.1177.3686.08

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna