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PAHARI_EIJ_v1.1

Organism name:
Mus pahari (shrew mouse)
Sex:
female
BioSample:
SAMEA3367645
BioProject:
PRJEB14896
Submitter:
EBI
Date:
2017/04/28
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_900095145.2 (latest)
RefSeq assembly accession:
GCF_900095145.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FMBV02
Genome coverage:
74x

IDs: 1086041 [UID] 4428958 [GenBank] 4487688 [RefSeq]

See Genome Information for Mus pahari

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length2,475,012,951
Total ungapped length2,240,119,878
Gaps between scaffolds0
Number of scaffolds2,581
Scaffold N50111,406,228
Scaffold L509
Number of contigs133,720
Contig N5029,465
Contig L5022,851
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)17,879

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900095144.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1LT608296.1=NC_034590.10
Chromosome 2LT608286.1=NC_034591.11
Chromosome 3LT608290.1=NC_034592.11
Chromosome 4LT608287.1=NC_034593.11
Chromosome 5LT608292.1=NC_034594.10
Chromosome 6LT608307.1=NC_034595.10
Chromosome 7LT608288.1=NC_034596.10
Chromosome 8LT608301.1=NC_034597.10
Chromosome 9LT608291.1=NC_034598.10
Chromosome 10LT608289.1=NC_034599.10
Chromosome 11LT608304.1=NC_034600.10
Chromosome 12LT608305.1=NC_034601.10
Chromosome 13LT608299.1=NC_034602.10
Chromosome 14LT608308.1=NC_034603.11
Chromosome 15LT608295.1=NC_034604.10
Chromosome 16LT608294.1=NC_034605.10
Chromosome 17LT608298.1=NC_034606.10
Chromosome 18LT608302.1=NC_034607.10
Chromosome 19LT608297.1=NC_034608.10
Chromosome 20LT608293.1=NC_034609.10
Chromosome 21LT608306.1=NC_034610.10
Chromosome 22LT608303.1=NC_034611.10
Chromosome 23LT608309.1=NC_034612.10
Chromosome XLT608300.1=NC_034613.11
unplacedn/an/an/a2,552

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,475,012,9512,5812,240,119,878111,406,228131,1390
Chromosome 1Assembled molecule172,151,1281151,543,287172,151,1288,5400
Chromosome 2AllAssembled moleculeUnlocalized scaffolds164,343,849163,939,365404,484211146,018,851145,707,194311,657163,939,365163,939,365404,4848,1288,10622000
Chromosome 3AllAssembled moleculeUnlocalized scaffolds164,417,126164,141,553275,573211152,797,364152,533,895263,469164,141,553164,141,553275,5738,6458,62322000
Chromosome 4AllAssembled moleculeUnlocalized scaffolds146,658,995146,485,248173,747211135,197,484135,030,060167,424146,485,248146,485,248173,7477,8717,85714000
Chromosome 5Assembled molecule167,013,4021155,870,086167,013,4028,7810
Chromosome 6Assembled molecule107,150,856193,749,561107,150,8565,4570
Chromosome 7Assembled molecule113,323,9121100,599,838113,323,9125,7340
Chromosome 8Assembled molecule111,406,2281100,965,028111,406,2285,5950
Chromosome 9Assembled molecule92,399,829186,886,27392,399,8295,1810
Chromosome 10Assembled molecule116,904,9861109,308,225116,904,9866,1470
Chromosome 11Assembled molecule77,350,604172,805,14977,350,6044,0670
Chromosome 12Assembled molecule89,017,189185,172,41789,017,1894,7070
Chromosome 13Assembled molecule96,704,406190,402,55396,704,4065,1130
Chromosome 14AllAssembled moleculeUnlocalized scaffolds89,028,28888,915,856112,43221184,989,57284,883,164106,40888,915,85688,915,856112,4324,9674,9598000
Chromosome 15Assembled molecule82,564,344179,218,77882,564,3444,4910
Chromosome 16Assembled molecule69,342,659161,012,48269,342,6593,2660
Chromosome 17Assembled molecule68,186,955164,638,09668,186,9553,7250
Chromosome 18Assembled molecule59,539,374154,015,80059,539,3743,3760
Chromosome 19Assembled molecule89,631,738168,718,36689,631,7384,3160
Chromosome 20Assembled molecule52,117,086150,094,11152,117,0862,8350
Chromosome 21Assembled molecule55,716,805149,137,64555,716,8052,9750
Chromosome 22Assembled molecule50,160,631147,833,85650,160,6312,9690
Chromosome 23Assembled molecule41,896,614138,617,15741,896,6142,6420
Chromosome XAllAssembled moleculeUnlocalized scaffolds149,018,284148,379,591638,693211115,190,959114,939,065251,894148,379,591148,379,591638,6937,8607,83228000
unplacedAssembled molecule48,967,6632,55245,336,94035,3103,7510