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IMG-taxon 2622736522 annotated assembly

Organism name:
Pacificibacter marinus (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 25228
BioSample:
SAMN04488032
BioProject:
PRJEB16853
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/10/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900109555.1 (latest)
RefSeq assembly accession:
GCF_900109555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FNZV01
Genome coverage:
317x

IDs: 878861 [UID] 3697428 [GenBank] 4876088 [RefSeq]

See Genome Information for Pacificibacter marinus

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,870,734
Total ungapped length3,869,979
Gaps between scaffolds0
Number of scaffolds43
Scaffold N50217,138
Scaffold L506
Number of contigs46
Contig N50217,138
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)43

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,870,734433,869,979217,13830

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pacificibacter marinusPacificibacter marinus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003814915.1Pacificibacter maritimustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.0317.1921.57

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected